Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi543g00024 ATGAAGTTTTCCCTTTTCGGTTGTTTCTCCGCATCGACCATAGACAAAAACAACAACGACTTTGCAGAAGGAGAGAATGATGGAGGCTTTCGTGTATTCACATATAACCAATTGAAATCAGCCACTGGTAATTTTAATGAGAAGATTGGAGAAGGTGGATTTGGCTCTGTTTATAAGGGGAGGCTTAGAGATGGCACTTTTGTAGCAGTGAAAGTGCTTTCCATTGAGCTCGAATCCATGCGAGGAGAGAGGGAATTCGTTGCAGAATTAGCAACACTCGCAAATATCAAGCACCAAAATCTAGCCACCCTTCAAGGGTGTTGTGTGGAAGGTGCACACAGATATTTGGTCTATGATTACATGGAGAACAACACACTCTACCACGCTTTCTTAGGTTCGGAGGATAGAAGGATGAGATTCAGTTGGGAAACAAGGAAGGACATATCCATAGGTGTGGCCCGGGGGCTTGTTGTTCTCCATGAGGAGCTTAGGCCCCATATCGTACATAGAGACATCAAAGCCAAAAATATACTTCTTGATCAGAATTTTACACCTAAAGTTTCAGACTTTGGTTTGGCAAAATTACTGAGAGATGAAAAATCTCACATCAGTACTCAAGTTGCAGGGACATTTGGCCTAGCAGTTGTAGATGCTTATCAAGATATTGAGCGGTTCATTGTAGAGAAGGCTTGGGCAGCTTATGAGACTAATGATCTATTAAGAATGGTTGATCCTGTGCTTAATATGAACTTTCCTATGGAAGAAGCTATAAAATTCCTCAAGGTGGGACTGCTTTGCGTGCAAGAAACCGCAAAGCTTCGGCCACGAATGTCAGAGGTTGTGGAAATGTTGACCAATAGAATTAATATGAAAGACGTTCACATTGCAAAACCAGGGTTTGTTGCTGACCTCAGGAACATCAAAATCAAGCAACAAGCATCAGTACACTCACCACAGGAATCAAGTTCAGCTGGAGCAAGCTTTGCAAGCTCCATTTGGAGTATGGCCAATCTTGCTCGTTAA 1023 0.4242 MKFSLFGCFSASTIDKNNNDFAEGENDGGFRVFTYNQLKSATGNFNEKIGEGGFGSVYKGRLRDGTFVAVKVLSIELESMRGEREFVAELATLANIKHQNLATLQGCCVEGAHRYLVYDYMENNTLYHAFLGSEDRRMRFSWETRKDISIGVARGLVVLHEELRPHIVHRDIKAKNILLDQNFTPKVSDFGLAKLLRDEKSHISTQVAGTFGLAVVDAYQDIERFIVEKAWAAYETNDLLRMVDPVLNMNFPMEEAIKFLKVGLLCVQETAKLRPRMSEVVEMLTNRINMKDVHIAKPGFVADLRNIKIKQQASVHSPQESSSAGASFASSIWSMANLAR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi543g00024 340 FunFam Os07g0541700 protein 121 210 - -
Sebi543g00024 340 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 223 321 - -
Sebi543g00024 340 ProSiteProfiles Protein kinase domain profile. 43 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi543g00024 340 FunFam serine/threonine-protein kinase PBS1-like 12 120 - -
Sebi543g00024 340 Gene3D Transferase(Phosphotransferase) domain 1 121 219 - -
Sebi543g00024 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Sebi543g00024 340 Pfam Protein kinase domain 46 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi543g00024 340 SUPERFAMILY Protein kinase-like (PK-like) 28 298 IPR011009 -
Sebi543g00024 340 Gene3D Transferase(Phosphotransferase) domain 1 220 301 - -
Sebi543g00024 340 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Sebi543g00024 340 Gene3D Phosphorylase Kinase; domain 1 13 120 - -
Sebi543g00024 340 SMART serkin_6 43 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi543g00024 Sebi-Chr543 266980 268615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi543g00024 32 303 Receptor kinase-like Gene Family AT1G56120 43.464 1.08e-73 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Sebi543g00024 Pkinase 9.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi543g00024 - - gmx:100813945 511.531