Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi543g00023 ATGGATAATACCGAAAAGATGAAGGATTGTTTTGATAGAGTTGCTTTGTCTTTGACTCCAGGAAGTAGCGGAGCTAACAACCGTCGGAGACACAGTGGCAGCAACAGCGGCCGGCGAATTCATCCTCCGCCGCATCCGCCGGTGGCGGCACAGCCGGAAATGGCGGGCAACCGATTCGTGTACCCCGCCGCCGCTACGCCGTATCACAACTACCCAGGTTACTATCCGCCGCCACCGACAACTGGGCCGGTGCCTTTGCCGGCACCGTTCGACCACCATCACCGTCCGGCGATGGACCCAATGTGGGGGCGTTACCCGGCACCGCCGCCGCCGCAACCGGCTCCCTATGTAGAGCATCAGAAGGCGGTTACTATAAAGAACGACGTGAACATCAAGAAGGAGACTCTGAGGATTGAGCCTGATGAGGAAAATCCTGGCCATTTCCTTGTGTCATTCACTTTTGATGCCACCGTTTCTGGGAGCATCACCATAATTTTCTTCGCAAAAGAAGGTGAAGGTTGCATCCTTACCCCAATGAAAGAAGATGTTCTTCGACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGGACTGGTATCTATTTTTCAGTATTTGAGGAGTCTGAGCTATTGAAAGTGGGTGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCAACCAAGACGGATCAAATGAAACTCCAACATCTGGTGGTACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCGGGAAAAGAGTGTGTTATCTGCTTGTCCGAGCCTCGGGACACAACTGTCCTTCCCTGCCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAATCTGAGGAGTGA 1095 0.505 MDNTEKMKDCFDRVALSLTPGSSGANNRRRHSGSNSGRRIHPPPHPPVAAQPEMAGNRFVYPAAATPYHNYPGYYPPPPTTGPVPLPAPFDHHHRPAMDPMWGRYPAPPPPQPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGHFLVSFTFDATVSGSITIIFFAKEGEGCILTPMKEDVLRPVTVNFQQGLGQKFRQPAGTGIYFSVFEESELLKVGDMDVYPVAVKADASSGNQDGSNETPTSGGTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPESEE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi543g00023 364 MobiDBLite consensus disorder prediction 235 253 - -
Sebi543g00023 364 FunFam probable E3 ubiquitin-protein ligase LOG2 292 357 - -
Sebi543g00023 364 Pfam Zinc finger, C3HC4 type (RING finger) 306 352 - -
Sebi543g00023 364 SUPERFAMILY RING/U-box 307 352 - -
Sebi543g00023 364 MobiDBLite consensus disorder prediction 1 52 - -
Sebi543g00023 364 MobiDBLite consensus disorder prediction 234 253 - -
Sebi543g00023 364 ProSiteProfiles Zinc finger RING-type profile. 308 347 IPR001841 -
Sebi543g00023 364 SMART ring_2 308 346 IPR001841 -
Sebi543g00023 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 357 IPR013083 -
Sebi543g00023 364 PANTHER MAHOGUNIN 68 357 IPR045194 GO:0061630
Sebi543g00023 364 CDD mRING-HC-C3HC5_MGRN1-like 306 347 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi543g00023 Sebi-Chr543 243621 259306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi543g00023 112 327 C3H Transcription Factor Family AT3G09770 68.919 2.42e-102 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi543g00023 - - gmx:100783831 555.829