Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi543g00001 ATGGCCGATGCTCCGACGAGTCCCGGAGGCGGAGGCGACCACGAGAGCGGCGGCGACCACAGTCCGCGCTCCAATTTCCGAGAGCAGGATCGGTACCTTCCCATCGCCAACATCAGCCGTATCATGAAGAAGGCGCTTCCTGCAAACGGAAAAATTGCCAAGGACGCCAAGGAGACCGTTCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACTAGCGAGGCGAGCGATAAGTGCCAGAAAGAAAAGAGGAAGACCATTAACGGTGATGATTTGCTTTGGGCAATGGCTACTCTGGGTTTCGAGGATTATATTGATCCACTCAAAATTTACCTCACCACATACAGAGAGATTGAGGGTGATACAAAGGGCTCAGCCAAGGGTGGAGATGCATCTGCTAAGAAAGATGTTCATCTGAATTCCAGTGCCCAGCTTGCTCATCAAGGTTCTTTCTCACAAGTTGTTAATTACTCGAACTCTCAGGCTCAACACATGATGGTTCCTATGCAAGGCCCACAATAG 522 0.5057 MADAPTSPGGGGDHESGGDHSPRSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKIYLTTYREIEGDTKGSAKGGDASAKKDVHLNSSAQLAHQGSFSQVVNYSNSQAQHMMVPMQGPQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi543g00001 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi543g00001 173 SUPERFAMILY Histone-fold 29 131 IPR009072 GO:0046982
Sebi543g00001 173 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sebi543g00001 173 MobiDBLite consensus disorder prediction 1 29 - -
Sebi543g00001 173 Gene3D Histone, subunit A 19 165 IPR009072 GO:0046982
Sebi543g00001 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Sebi543g00001 173 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Sebi543g00001 173 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Sebi543g00001 173 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Sebi543g00001 173 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi543g00001 Sebi-Chr543 2772 5306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi543g00001 7 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.059 7.85e-90 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi543g00001 CBFD_NFYB_HMF 5.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi543g00001 K08065 - gmx:100820170 295.434