Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi542g00031 ATGGGGTGGGATCTCTTTGTGTGCTGCTTCACTAGCACTTCTTCTAAGTTGAAGTGGAAAATCTTCCCCTTTATGCAACTTACAAAAGCCACAAATAATTTTGATGAATGTCATATTCTTGAAAGGAGAGGCTTTGCCGTAGTATATTATGGAAAACTTGAGAATGGACATGAGATTGCAATCCAGCGCTTTAAGGAAGACAACCGCCACATATTGCAACGGTTCATTGATGAACCCGTTATCCTAAATTACATGCCCCACAAAAACCTTGTGTCAATTTATGGGGAAGCCATTCATCAAAAGGAATCCCTGTTAGTACAAGAATACCTATCCAATGGAACTCTTGCTGCTCATCTTCAAGGAAAAATAGCAGAAAGCAGGACATTGCCTTGGCTTACCCGATTGGATATTGCCATTGATACTGCAAATACTTTGGACTATCTTCACTATAATGGCATCATCCATCGTGATGTGAAGTCCAGAAATATTTTCCTTGACATGAATTTTTGTGCTAAAATTGCTAACCTTCATTTATCGCAGAAACTTCCCGAAGGAGTTCCTATAGATGCTACCCATGTTACAAGGGATATAATAGGAACATGTGGTTATATAGACCCAGAGTATGTGTCAAAAGGTTTCCTTAATGTAAAAAATGATGTTTATAGCTTTGGGGTGGTGTTGTGTGAGATTGTATCATCTATGCTTGCAGAATACTGGATTCAGAATGAGGTTGATAGTCTTGCTACCATTTTAAGCACAAAAGTTGAAGACCAAGCTTTGTTGGAGTTCTTCGATCCTGGACTTGGCTTCCAATCCGACCTTAAGATCAAGCAGATGATGATTGCTACCGCTGAGCTTGCGTCTCAGTGCTTGCAATGTCCACTAGGATTAAGGCCAAGTATGGAACAGGTGCTACAGACTCTTAATGGCATAAAGCAAGGGAAATATGAAACAAGTCCGATGAAAAATTATGGATTGTTGATGTCTTATTGTAATCCATATATGTCAGCTTTCAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAATCATTTTGACACTTTCCTTGGAAAGGGAGGGTTTGGCACAGTCTACTATGGAAAACTTCAAGATGGGCGAGAGGTTGCAATAAAACGTTTCTATGGGGAGACAGACAAAACCATTAAGCAATTCATGAAAGAAATTGAGATCTTATGTCTCTTGCAACATCAAAATCTGGTTTCACTCTATGGCTGTAGTTCTCGTCATAGCAACAAATACATGCTAGTGTATGAGTACATCTCCAATGGCACTCTTTCTAAGCATCTTCATGATGAATCTTCTTGTGGTAAACTAGCATGGCCTACTAGATTGAATATTGCCATTGAAACTGCAACTGCCTTGGTATATCTTCATGACTCAAGGATCATCCACCGTGACATAAAAGGGAGCAACATTCTGTTGGATGAAAATTTTACTGTCAAAGTAGCAGATTTTGGACTCTCACGGTTTCTTCCAGATCATGTTACACACGTTTCAACTATGGCAGTTGGAACTCGTGCTTACATAGATCCAGACTATTATTTATCTGGAAGGGTCAGTAACAAAAGTGATGTCTATAGCTTTGGGGTTGTCTTGTTTGAGCTCATATCATCCAAACCCCCAAGTTTAATATATGGCACAGAGGATGTTACTTTTGTCCAATTCGCAATGAGTAAAATCTTAAACAAGGCATTAGAGGAGCTGGTGGATCCAAGTCTTGGATTTGATTCTGACAAAAATTTAATGGAAATGAAAACAGCAGTGGCAGAGTTAGCATTTCAGTGCGTGCAGTGCCCCAAGGATCTTAGACCATCCATGAAACAGGTGTTAGAGACCTTAGAGGGCATAAGAAAGGGGACATGGGGATTCAGCCAGATAACTTAG 1908 0.3978 MGWDLFVCCFTSTSSKLKWKIFPFMQLTKATNNFDECHILERRGFAVVYYGKLENGHEIAIQRFKEDNRHILQRFIDEPVILNYMPHKNLVSIYGEAIHQKESLLVQEYLSNGTLAAHLQGKIAESRTLPWLTRLDIAIDTANTLDYLHYNGIIHRDVKSRNIFLDMNFCAKIANLHLSQKLPEGVPIDATHVTRDIIGTCGYIDPEYVSKGFLNVKNDVYSFGVVLCEIVSSMLAEYWIQNEVDSLATILSTKVEDQALLEFFDPGLGFQSDLKIKQMMIATAELASQCLQCPLGLRPSMEQVLQTLNGIKQGKYETSPMKNYGLLMSYCNPYMSAFKIFHHAELEEATNHFDTFLGKGGFGTVYYGKLQDGREVAIKRFYGETDKTIKQFMKEIEILCLLQHQNLVSLYGCSSRHSNKYMLVYEYISNGTLSKHLHDESSCGKLAWPTRLNIAIETATALVYLHDSRIIHRDIKGSNILLDENFTVKVADFGLSRFLPDHVTHVSTMAVGTRAYIDPDYYLSGRVSNKSDVYSFGVVLFELISSKPPSLIYGTEDVTFVQFAMSKILNKALEELVDPSLGFDSDKNLMEMKTAVAELAFQCVQCPKDLRPSMKQVLETLEGIRKGTWGFSQIT 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi542g00031 635 Pfam Protein tyrosine and serine/threonine kinase 44 252 IPR001245 GO:0004672|GO:0006468
Sebi542g00031 635 Pfam Protein tyrosine and serine/threonine kinase 353 621 IPR001245 GO:0004672|GO:0006468
Sebi542g00031 635 Gene3D Transferase(Phosphotransferase) domain 1 428 629 - -
Sebi542g00031 635 Gene3D Transferase(Phosphotransferase) domain 1 110 325 - -
Sebi542g00031 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Sebi542g00031 635 FunFam Wall-associated receptor kinase 3 428 634 - -
Sebi542g00031 635 SUPERFAMILY Protein kinase-like (PK-like) 13 308 IPR011009 -
Sebi542g00031 635 SUPERFAMILY Protein kinase-like (PK-like) 333 625 IPR011009 -
Sebi542g00031 635 SMART serkin_6 351 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00031 635 SMART serkin_6 34 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00031 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Sebi542g00031 635 ProSiteProfiles Protein kinase domain profile. 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00031 635 Gene3D Phosphorylase Kinase; domain 1 9 109 - -
Sebi542g00031 635 Gene3D Phosphorylase Kinase; domain 1 329 427 - -
Sebi542g00031 635 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Sebi542g00031 635 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 338 628 IPR044652 GO:0004672
Sebi542g00031 635 ProSiteProfiles Protein kinase domain profile. 34 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00031 635 CDD STKc_IRAK 357 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi542g00031 Sebi-Chr542 644103 646343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi542g00031 340 625 Receptor kinase-like Gene Family AT1G25390 56.014 3.14e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi542g00031 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi542g00031 - - gsj:114418636 936.021