Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi542g00030 ATGACGTTGGGGTGTGATATGTTGCAATGCTTCTTCACTAGCACTTCTTCTGATTCTGATACATTTCCAGAGAATGAGGATGGTGTTGAGTTAAAGTGGAAAATCTTCGCCTATAATGAACTTGCCAAAGCCACAAACAATTTTGATCCACGCAATTGTTGTGGATGGGGAGACAAGGCCACAATATATTATGGCAAACTTGACAATGGTTGTGAGATTGCAATCCAACACTTTCATGAAGAAAAGCACCAAACATTTCAAAAGTTCATCAAGGAAACTTTGATCCTAAATTACTTGCCCCATAAAAATCTTGTGTCAATTTATGGGCGATCCTCTGATGAAGAACCAATGCTAGTACATGAATACCTCTCCAATGGCACTCTTGCTGGTCGTCTTCAAGGTGACATAGCAGAAAGCAACATGGTACCTTGGCTTACCAGATTGAATATTGCCATTGATACTGCAAATGCATTGGACTATCTTCATGGTTATGGCATCATCCACTCTGATGTAAAGTCCAGCAATATTCTCCTAGATAAGAATTTTTGTGCTAAAGTTTCTAACTTTTTGTTATCACAGAAACTTCCAGAGGGAGTTTCTGCCAATGCTACACATGTTACAAGTGATATAACTGGAATATTTGGTTATATAGATCCAGAGTATGAGCAATATGGCTGTCTTAGTGTGAAAAATGATGTTTATAGCTTTGGGGTGGTGTTATTTGAGCTTATATCATCAAAGCTTGTTAAACATTGGGAAGGGAGTGGTGGTGGTGATAGTCTTGCTATTATGTTAAGCAGAAAAATCCAAAACCAATCACTGGAGGAGCTAGTGGATCCAAGACTTGGCTTCCATTCAGATCCTATCATCAATAAGATGATAATTGATGTAGCTGAGCTTGCAAGTCGGTGCTTGCAATCTCCACAAGAACTAAGGCCATTCATGGGACAGGTACTAGAGACTCTCCATTGCATAAGACAAGAGGGAAAAGAAAAAAACCCCAAAAAAGGAAGACTTAGAGATGGGCGTAAGATTGCAGTTAAACGTTTTCATGAAGAGACTGACAAGACTGTTAAGCATTTCATGAATGAAATTGACATGCTAAGTGACTTGTGCCATCAAAACCTGGTTTCACTCTATGGCTGCAGTTCCCTAGACAGCAAAGAACACCTTCTAGTGTATGAGTATGTCTCATGTGGCTCTCTTTCTAAGCATCTTAATGGATCTTCTAGCACCAAACTACCATGGCTTACTAGATTGAATATTGCCATTGAGACTGCAACTGCATTGGTGTATCTCCATGATTCAGGTATCATCCACCGTGATGTAAAAGCAAGCAACATTCTCTTGGATGAGAATTTGATGGTTAAAGTTGCAGATTTTGGACTCTCAAGATATTTTCCAGATTTTGTTACCCATGTTTCAACCCTTCCAGTAGGAACTCATGCTTACATAGATCCTGAATATTATCAATCAGGCAGGGTTAGTGACAGAAGTGATGTGTATAGCTTTGGGGTGGTTTTGTTTCAGCTTATATCATCTAAGCCTCCAAATGTCACGGAGGGCACAGAGTGTGTTACTCTTGCACACTTTGCAATGGATAAATTATTAAACAAGGCATTGGAGGAGCTAGTGGATCCAAATCTTGGGTTTGATTCTGACAAAAACATAATGGAAACGGTAACAGCAGTGGCAGAGTTAGCATTTCAGTGCGTACAGTGTCCCAAGGAACTTAGGCCATCCATGAAGCAGGTGCTAGAGACCCTTGAGGGCATAAAGAAAGGGATATGGTTGTTTAACCAGCTAACATAG 1812 0.4001 MTLGCDMLQCFFTSTSSDSDTFPENEDGVELKWKIFAYNELAKATNNFDPRNCCGWGDKATIYYGKLDNGCEIAIQHFHEEKHQTFQKFIKETLILNYLPHKNLVSIYGRSSDEEPMLVHEYLSNGTLAGRLQGDIAESNMVPWLTRLNIAIDTANALDYLHGYGIIHSDVKSSNILLDKNFCAKVSNFLLSQKLPEGVSANATHVTSDITGIFGYIDPEYEQYGCLSVKNDVYSFGVVLFELISSKLVKHWEGSGGGDSLAIMLSRKIQNQSLEELVDPRLGFHSDPIINKMIIDVAELASRCLQSPQELRPFMGQVLETLHCIRQEGKEKNPKKGRLRDGRKIAVKRFHEETDKTVKHFMNEIDMLSDLCHQNLVSLYGCSSLDSKEHLLVYEYVSCGSLSKHLNGSSSTKLPWLTRLNIAIETATALVYLHDSGIIHRDVKASNILLDENLMVKVADFGLSRYFPDFVTHVSTLPVGTHAYIDPEYYQSGRVSDRSDVYSFGVVLFQLISSKPPNVTEGTECVTLAHFAMDKLLNKALEELVDPNLGFDSDKNIMETVTAVAELAFQCVQCPKELRPSMKQVLETLEGIKKGIWLFNQLT 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi542g00030 603 ProSiteProfiles Protein kinase domain profile. 322 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00030 603 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00030 603 SMART serkin_6 322 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00030 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Sebi542g00030 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Sebi542g00030 603 ProSiteProfiles Protein kinase domain profile. 48 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00030 603 Gene3D Phosphorylase Kinase; domain 1 334 398 - -
Sebi542g00030 603 Pfam Protein tyrosine and serine/threonine kinase 55 321 IPR001245 GO:0004672|GO:0006468
Sebi542g00030 603 Pfam Protein tyrosine and serine/threonine kinase 341 589 IPR001245 GO:0004672|GO:0006468
Sebi542g00030 603 Gene3D Transferase(Phosphotransferase) domain 1 399 596 - -
Sebi542g00030 603 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Sebi542g00030 603 SUPERFAMILY Protein kinase-like (PK-like) 336 594 IPR011009 -
Sebi542g00030 603 FunFam Wall-associated receptor kinase 3 397 601 - -
Sebi542g00030 603 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Sebi542g00030 603 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 336 595 IPR044652 GO:0004672
Sebi542g00030 603 SUPERFAMILY Protein kinase-like (PK-like) 33 326 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi542g00030 Sebi-Chr542 638530 640929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi542g00030 337 593 Receptor kinase-like Gene Family AT1G25390 52.874 8.26e-86 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi542g00030 PK_Tyr_Ser-Thr 2.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi542g00030 - - gmx:102666805 731.865