Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi542g00029 ATGAAGTGGCAAATCTTCCCCTATAGTGAACTTGCCAAAGCCACAAACAATTTTGATCAATTTAATTGTTGTGGATGGGGTGACATGGCAAAAGTATATTATGGCAAACTTGATAATGGGTGTGAGATTGCAATCCAATGTTTTAATGAAGAAAAGCACCAAATATTTCAACAGTTCATCAATGAAACTGTGATCCTAAATTACTTGCCCCATAAAAATCTTGTCTCAATTTATGGATGTGCCTCTGATGAGGAACCTATGCTAGTACATCAATACCTCTCTAATGGCACTCTTGCTGGTCGTCTTCAATGTGACATAGATGAAAGCAGCATGGTACCTTGGTATACCCGATTGGATATTGCCATTGATACTGCAAATGCTTTGGCCTATCTTCACTATAATGGCATCATCCACTCTGATGTAAAGTCCAGCAATATTCTTCTAGATAAAAACTTCTGTGCTAAAGTTTCTAACTTTCTATTGTCAATGAAACTTCCAGAGGGAGTTTCTGCCAATGCTAGACATGTTACAACTGATATAATAGGAACATGTGGTTGTATAGATCCAGAGTATGAGCAATATGGCTGTCTTAGTGTGAAAAATGATGTTTACAGCTTTGGGGTGGTATTGTTTGAGCTTATATCATCAAAACTTGTTAAATATTGGGAAGGGAGTGATGGTGATAGTCTTGCTACTATGTTAAGCAGAAAAATCCAAAACCAATCATTGGAGGAGCTAGTGGATCCAAGAATTGGCTTCCAATCAGATCCTATTGTCAAGCAGATGATAATTGCTGTAGCAGAGCTTGCAACACAGTGTTTGCAGTGTCCACAAGAGCTAAGGCCAACCATGGGACAGGTGCTACAGACTCTCCATTGCATAAGACAAAAGGGATATGAAGAAAACTCAAATAAAGGTTTCAAATTCTTTGGCCTTGCTGAACTTGATGAAGCCACTGAAGGTTTTAAGACTTGTCTTGGAAAGGGTGGGTTTGGCACTGTATATTATGGAAAACTTAGAGATGGCCGTGAGGTTGCAATTAAACGTTTCCATGAAGAGACAGACAAGACTGTTATGCATTTCATGAATGAAATTGACATCCTAAGTGACTTGTGCCATCAAAACCTTGTTTCACTCTATGGCTGCAGTCCCCAAGACAGCAATGAACACCTGCTAGTGTATGAGTATGTCTCATGTGGCACTCTTTCTTTTCATCTTCATGGATCTTCTGGCACCAAACTTCAATGGTTTACTAGATTGAATATTGCCATTGAAACTGCAACTGCATTGGTATATCTTCATGATTCAGGTATCATCCACCGTGATGTAAAAGCAAGCAACATTCTCTTGGATGAGAGTTTCATGGTTAAAGTTGCAGATTTTGGACTCTCACGGTATTTTCCAGACATTGTTACTCATATTTCAACCATTCCAGTAGGTACTCGTCCTTACATAGATCCAGAATACTATAGATATGGAAGGGTTTGTGACAGAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTCAGCTTATATCATCCAATCCACCAAGTGTCATGAAGGGTACAGAGTGTGTCACTCCTCTTGCCCTCTTTGCAATGAATAAAATCTTAAATAAGGCATTGGAGGAGTTAGTGGATCCAAATCTTGGGTTTGATTCAGACAAAAACATAATGGAAACAATAACAGCAGTGGCAGAGTTAGCATTTCAGTGCGTACAGTGTCCTAAGGAATTCAGGCCATCCATGAAACAAGTGCTACAGACCTTGGAGGGCATCAAGAAAGGGATATGGTTATTCAACCAGCTAACATAG 1815 0.3945 MKWQIFPYSELAKATNNFDQFNCCGWGDMAKVYYGKLDNGCEIAIQCFNEEKHQIFQQFINETVILNYLPHKNLVSIYGCASDEEPMLVHQYLSNGTLAGRLQCDIDESSMVPWYTRLDIAIDTANALAYLHYNGIIHSDVKSSNILLDKNFCAKVSNFLLSMKLPEGVSANARHVTTDIIGTCGCIDPEYEQYGCLSVKNDVYSFGVVLFELISSKLVKYWEGSDGDSLATMLSRKIQNQSLEELVDPRIGFQSDPIVKQMIIAVAELATQCLQCPQELRPTMGQVLQTLHCIRQKGYEENSNKGFKFFGLAELDEATEGFKTCLGKGGFGTVYYGKLRDGREVAIKRFHEETDKTVMHFMNEIDILSDLCHQNLVSLYGCSPQDSNEHLLVYEYVSCGTLSFHLHGSSGTKLQWFTRLNIAIETATALVYLHDSGIIHRDVKASNILLDESFMVKVADFGLSRYFPDIVTHISTIPVGTRPYIDPEYYRYGRVCDRSDVYSFGVVLFQLISSNPPSVMKGTECVTPLALFAMNKILNKALEELVDPNLGFDSDKNIMETITAVAELAFQCVQCPKEFRPSMKQVLQTLEGIKKGIWLFNQLT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi542g00029 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Sebi542g00029 604 ProSiteProfiles Protein kinase domain profile. 320 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00029 604 ProSiteProfiles Protein kinase domain profile. 18 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00029 604 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Sebi542g00029 604 FunFam Lectin-domain containing receptor kinase A4.3 397 602 - -
Sebi542g00029 604 SMART serkin_6 320 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00029 604 SMART serkin_6 18 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00029 604 Pfam Protein tyrosine and serine/threonine kinase 25 291 IPR001245 GO:0004672|GO:0006468
Sebi542g00029 604 Pfam Protein tyrosine and serine/threonine kinase 323 590 IPR001245 GO:0004672|GO:0006468
Sebi542g00029 604 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Sebi542g00029 604 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 304 596 IPR044652 GO:0004672
Sebi542g00029 604 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Sebi542g00029 604 Gene3D Transferase(Phosphotransferase) domain 1 93 310 - -
Sebi542g00029 604 Gene3D Transferase(Phosphotransferase) domain 1 398 597 - -
Sebi542g00029 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Sebi542g00029 604 Gene3D Phosphorylase Kinase; domain 1 311 396 - -
Sebi542g00029 604 SUPERFAMILY Protein kinase-like (PK-like) 306 595 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi542g00029 Sebi-Chr542 633768 636089 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi542g00029 310 594 Receptor kinase-like Gene Family AT1G25390 54.483 2.38e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi542g00029 PK_Tyr_Ser-Thr 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi542g00029 - - gmx:102666805 804.668