Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi542g00016 ATGGTGGGGAATGTTGAAAACATAACAATTGTCGAAAATAATGCTGCTGATGCCATAGTGTCTTGTGCTTCTATGCTAGATAATGGAAGTTTTGTTCTTTTAGATAAGGACAATAAGCAGAATGATAGCACTTTGGTTCTTTACTATTCACCACCACATTCTGAAACACATGAACCTTACTGGGCTACTGGAACTCTAAAAACTGAATCAGTCTCGACGCATGTTGGAAAATATCCTGAAGATATTTTCCTTGTCTTCACAAAGGACATAGGAAGTGTTATCTGTGGTTTCAACAGTTACTGTGTTACCATCAATGGGAAGCCTAATTGTGAATGCCCTGAGCTGCTACATAGAGGGTGTTGGAAGAAAAGATATCCTTTGAGTAATGGAAGGAAACACCCTAACATCAATGGAACAATAGCTCTTGTCAAGCATTTGAATCCAGCTGCAACAACAACAACAAGGTGTTTTACATACAAGCTTGAAGAAGCAACTACAGGCTTCAAACAAATATTGGGTAGAGGTGCTTTTGGGACAGTTTATAAAGGGGTAATAACATCAGATACCAGCAGATTTGTTGCTGTCAAAAAGCTAGATAAGGTTTTGCAAGAAGGTGAAAAGGAATTCAAAACAGAAGTGAGTGTGATTGGCCAAACCCACCACAGGAATTTGGTTTGTTTACTTGGTTACTGTGATGAAGGGGAGCATCGACTTCTGGTCTCTGAGTATATGAGTAATGGCTCACTAGCAAGCTTTCTCTTTGGGATTTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTCTAGGAATTGCAAGAGGTCTCACATATTTGCATGAAGAGTGCAGCACTCAGATCATTCATTGTGACATAAAGCCTCAGAATATACTCCTTGATGAGTTATTCACTCCAAGAATTTCTGATTTTGGGTTAGCAAAGCTTTTGTTGGCTGAGCAAACTAGAGCTGCTAAGACAGGTTTGAGAGGGCCAATTGGTTACTTTGCACCTGAATGGTTTAGGAAAGCTTCAATCACAACTAAAGTAGATGTTTACAGTTTTGGAGTGTTGCTGCTAGAGATCATATGCTGCAAATCAAGTGTTGCCTTTTCAATGGCAAATGAAGAAGAGGCACTCCTTGATTGGGCATATCATTGTTATTGCCAAGGAAAAGTAGCTAAGTTGGTGGAAAATGATGAGGAGGCAAAGAATGACATAAAGAGGGTAGAAAAACATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACTAAGACCTTCCATGAAGAAGGTCATCCAAATGCTTGAAGAAGTTACTGCAGTTCTGTGCCACCTCGCCCATCCATGTTCAATGTATAAGTTGAAACTTCATATTTTCTATGAAATAGTTCCAGGTTGTCTTTTTAATCTTTCAATCTATGAACACTTGTTCTATAATGAGATATTGTTTACATAG 1458 0.3903 MVGNVENITIVENNAADAIVSCASMLDNGSFVLLDKDNKQNDSTLVLYYSPPHSETHEPYWATGTLKTESVSTHVGKYPEDIFLVFTKDIGSVICGFNSYCVTINGKPNCECPELLHRGCWKKRYPLSNGRKHPNINGTIALVKHLNPAATTTTRCFTYKLEEATTGFKQILGRGAFGTVYKGVITSDTSRFVAVKKLDKVLQEGEKEFKTEVSVIGQTHHRNLVCLLGYCDEGEHRLLVSEYMSNGSLASFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDELFTPRISDFGLAKLLLAEQTRAAKTGLRGPIGYFAPEWFRKASITTKVDVYSFGVLLLEIICCKSSVAFSMANEEEALLDWAYHCYCQGKVAKLVENDEEAKNDIKRVEKHVMVAIWCIQEDPSLRPSMKKVIQMLEEVTAVLCHLAHPCSMYKLKLHIFYEIVPGCLFNLSIYEHLFYNEILFT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi542g00016 485 FunFam S-receptor-like serine/threonine-protein kinase 140 243 - -
Sebi542g00016 485 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 244 443 - -
Sebi542g00016 485 Coils Coil 391 411 - -
Sebi542g00016 485 CDD STKc_IRAK 172 438 - -
Sebi542g00016 485 Gene3D Phosphorylase Kinase; domain 1 137 243 - -
Sebi542g00016 485 Gene3D Transferase(Phosphotransferase) domain 1 244 445 - -
Sebi542g00016 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Sebi542g00016 485 ProSitePatterns Protein kinases ATP-binding region signature. 172 197 IPR017441 GO:0005524
Sebi542g00016 485 SMART serkin_6 166 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00016 485 Pfam Protein tyrosine and serine/threonine kinase 168 436 IPR001245 GO:0004672|GO:0006468
Sebi542g00016 485 SUPERFAMILY Protein kinase-like (PK-like) 159 437 IPR011009 -
Sebi542g00016 485 ProSiteProfiles Protein kinase domain profile. 166 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi542g00016 485 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 150 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi542g00016 Sebi-Chr542 466732 469673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi542g00016 157 437 Receptor kinase-like Gene Family AT1G60800 43.793 1.47e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi542g00016 PK_Tyr_Ser-Thr 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi542g00016 - - gmx:100796323 551.592