Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi541g00050 ATGGCGAACAAGAAACCACTCAGTCTCAACGACAGCCACTATCGCTTCCTCCAAGACCTTTCCGCTCCTCCCAAACCCAAACCCTCCGCTACTACAGAGGAGGAAAAAAAGACTAAGGTGAAAGTGCAAGGGCGACGCCGCCTCTGTAAGGTTGCGTATGGAGACGCCGGAAAAAATGTGGCCGTTGATGAGCCCAATTTTGATGATATCGTCGAACTTGATGATTCGCCCCTTCCGGCACCGAAAAGTGTGATCCAGATCGAGGAGAGCGGGGGTAGGAGTGAAATTAGGGATATTTTGAATGAACTTAGCTCAAAGTTCGAGTTGCTATCAGTTGAGAGGAAGAGGGTGCCGAAGCCTGTTGAGGGTTCGGTTGGAGTGAAAGAAACTTGTGAAGATGAGGCTTTAGAGTTTGGGAGTGCTGGGTCTTCATTTTCTCCACGACAGGATCCCTGTGACAGCTCGTCAGAGGGTACTAAGAAAGGTGGTGGTGGTGGTATTGAGTATGATTCGGATGATTCCGTTCAAGAGTTGGATCATTTTGAGCCTAAAAATGATGGTTCTATAACTTTGAATGGCCCAAAATCTACATTTAAGTTGCCGGGTAAGATTGGAAAAATGTTGTATCCACATCAGCGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGTAAAGGTGGAATCTTGGGTGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTGTTTCATTCACGTTTAATTAGAAGGGCGTTGGTTGTGGCCCCAAAAACCTTATTACCCCATTGGATAAAAGAACTATCAGTTGTTGGTCTCTCTGAGAAGACAAGAGAATACTTTGCAACTTCTACAAAAGTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAGGGTGTTCTTCTGACAACGTATGATATTGTTCGCAATAATTCCAAGTCCTTACGGGGGAATAATTATTTTGACGATGAAGAAAGTGAGGATGGCATTACATGGGACTACATGATTCTAGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTCGAGATACCCTGTGCTCACCGCATCGTCATTAGTGGCACGCCATTGCAAAATAATCTCAAGGAGTTGTGGGCATTGTTCAATTTCAGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGAAAAATTTGAATCACCTATACTTTGTGGAAATGACAAAAATGCTTCTGACAGAGAGAAGCGTATTGGTTCCTCTGTAGCAAAGGAGCTAAGAGATCGTATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGCTGATGACAAAACAACTGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGATTGACCAGCATTCAGCGGCATCTGTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCACTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTAACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTACAGCCAGATGAAGTTAATGTTGCAGAAAAATTGGCGATGCACATAGCAGATGTTGCAGACACAGACAAGTTTAAAGATGAACATGATGTGTCATGCAAGATTTCCTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGTGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTAGCATCCAAAGGTTACGACTTCTTACGAATTGATGGCACAACAAAAGCCAGTGACAGATTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGTGCTTCTATATTTCTCTTGACATCTCAGGTCGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCTTATCGTATTGGTCAAAAGAAAGATGTTCTTGTGTATAGACTGATGACATGCGGAACTGTTGAGGAAAAGATCTACAGGAAACAGGTATATAAAGGAGGATTATTCAAAACAGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAACGGCAATTGGATGAGGAGCATGATCGTCAGCATAAAGTGGATGACATTTTCAAAGCACATATAGAGTTCCTGAAAAGGCAGGGTATAGCTGGAGTTAGTCACCACAGTTTACTGTTTTCCAAGACAGACACAGTTCAAGCTGCTCCTGAGGATGATGAAGTAACAAGGAATCACAAGACTAAATATATTGGAACTTCAAGATCATCTTCTTCACATGAGCATATTGCTGATGGAGTTGATTTTGCTTTTAATCCTAAGGATGTCAACTTGAGCAAAAAAGGTTCTTCTCCAAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCGATGATTTCTAAATTACCTGACAAGGGGGAGAAACTACAGAAACGAATGGCGGAGCTGAATTTAGAGCTCGCTAAATTGAAGATGGAACAAGGAAATGTAGTTGATTTGGATGATTTTACTAGTGAATTTCAAAGAGTGTTGAATGTATAG 2748 0.4199 MANKKPLSLNDSHYRFLQDLSAPPKPKPSATTEEEKKTKVKVQGRRRLCKVAYGDAGKNVAVDEPNFDDIVELDDSPLPAPKSVIQIEESGGRSEIRDILNELSSKFELLSVERKRVPKPVEGSVGVKETCEDEALEFGSAGSSFSPRQDPCDSSSEGTKKGGGGGIEYDSDDSVQELDHFEPKNDGSITLNGPKSTFKLPGKIGKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFATSTKVREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYFDDEESEDGITWDYMILDEGHLIKNPSTQRAKSLLEIPCAHRIVISGTPLQNNLKELWALFNFSCPELLGDKKWFKEKFESPILCGNDKNASDREKRIGSSVAKELRDRIQPYFLRRLKSEVFNQADDKTTAKLSQKQEIIVWLRLTSIQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLQPDEVNVAEKLAMHIADVADTDKFKDEHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNLIQECLASKGYDFLRIDGTTKASDRLKIVNDFQEGVGASIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLKELFSLPKEGFDVSVTQRQLDEEHDRQHKVDDIFKAHIEFLKRQGIAGVSHHSLLFSKTDTVQAAPEDDEVTRNHKTKYIGTSRSSSSHEHIADGVDFAFNPKDVNLSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRMAELNLELAKLKMEQGNVVDLDDFTSEFQRVLNV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi541g00050 915 SMART helicmild6 594 677 IPR001650 -
Sebi541g00050 915 Pfam SNF2-related domain 223 515 IPR000330 GO:0005524|GO:0140658
Sebi541g00050 915 Gene3D - 190 467 IPR038718 -
Sebi541g00050 915 PANTHER SNF2/RAD54 FAMILY MEMBER 95 894 - -
Sebi541g00050 915 SMART ultradead3 203 406 IPR014001 -
Sebi541g00050 915 MobiDBLite consensus disorder prediction 1 41 - -
Sebi541g00050 915 MobiDBLite consensus disorder prediction 138 172 - -
Sebi541g00050 915 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 395 IPR014001 -
Sebi541g00050 915 Coils Coil 875 895 - -
Sebi541g00050 915 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 568 727 IPR001650 -
Sebi541g00050 915 FunFam Protein CHROMATIN REMODELING 24 187 465 - -
Sebi541g00050 915 Gene3D - 468 765 IPR027417 -
Sebi541g00050 915 Pfam Helicase conserved C-terminal domain 565 677 IPR001650 -
Sebi541g00050 915 CDD SF2_C_SNF 557 688 - -
Sebi541g00050 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 445 IPR027417 -
Sebi541g00050 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 752 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi541g00050 Sebi-Chr541 649388 656716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi541g00050 191 697 RAD5 or RAD16-like Gene Family AT3G16600 25.550 3.56e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi541g00050 SNF2_N 1.2e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi541g00050 K20093 - gmx:100779283 1476.84