Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi541g00039 ATGCAAGGTGCATTGGAGTTACCACCTGGCTTCAGATTTCACCCCACCGATGATGAGTTGGTGAATCACTACTTGTGTAGGAAGTGTGCTTCCCAGTCAATCGCTGTTTCTATTATCAAAGAACTCGACTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATGGCTCTTTATGGTGAGAAAGAATGGTACTTTTTCTCGCCAAGGGACCGAAAATATCCAAACGGTTCACGACCGAACCGGGCGGCTGGAACCGGATATTGGAAGGCCACGGGAGCGGATAAACCGATTGGAAAACCGAAGCCACTTGGGATTAAGAAGGCACTTGTGTTCTACGCAGGAAAAGCCCCTAAAGGAGTGAAGACCAATTGGATCATGCATGAGTATCGTCTTGCCAACAAAGGGAAAATTGAGAAATACAACAGTGTGGGGATGGTGGATCAGAAAGTAGCAAAGTTTTCTGAGGAATTTCACGAGACTAAGCCTGAGATCAAGATGTACGGCCAGGATGATTTCAGGAATGACCAATTGTATATGGACACGTCAGATTCGGTGCCTAGGTTGCACACGGACTCAAGCTGTTCGGAGCACGTGGTTTCACCGGATGTCACGTGCGAGAAAGAGGTGCAGAGCGAGCCCAAGTGGAATGAACTTGAGCTGGGCCCAGACCCAGTTGCAGGAGGAGCCTTTGATTTTCAGTTGAATTTTATGGACAACAATAACATGAACATGGCAGGTGGAGATGACCTTTTTGCCCCTCAGTTCCAAATGAACCCTTGGCAAGATATGTTCATGTACCTACCCAAGACATTTTGA 816 0.4706 MQGALELPPGFRFHPTDDELVNHYLCRKCASQSIAVSIIKELDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANKGKIEKYNSVGMVDQKVAKFSEEFHETKPEIKMYGQDDFRNDQLYMDTSDSVPRLHTDSSCSEHVVSPDVTCEKEVQSEPKWNELELGPDPVAGGAFDFQLNFMDNNNMNMAGGDDLFAPQFQMNPWQDMFMYLPKTF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi541g00039 271 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Sebi541g00039 271 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Sebi541g00039 271 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Sebi541g00039 271 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 173 - -
Sebi541g00039 271 SUPERFAMILY NAC domain 3 136 IPR036093 GO:0003677|GO:0006355
Sebi541g00039 271 FunFam NAC transcription factor 16 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi541g00039 Sebi-Chr541 533891 535078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi541g00039 1 271 NAC Transcription Factor Family AT1G01720 57.966 4.71e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi541g00039 NAM 3.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi541g00039 - - gmx:100170751 436.032