Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi541g00018 ATGGCTTCTTCTATTGTTCGTAGGACCATCACCCACAGATTGAAGCTCCCATTTTCTTCTTCTCGGTGCTTGAATCATCACTTTGTGTCTCGCCATAGCTCAATCCACGCTGTTGAAGATGCCGTTCCCTTCCACAGCCAAGCCGTTGGGGGTGGTGGTGCAGGACTCCCATCTTATATGCGTGGAGCTGTCTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTCCACATTCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCTTGTGGAGTATGCCACTCTGATCTACATGTTCTGAAAGGTGAAATTCCATTTTCTAGTCCTTGCGTTTTGGGGCATGAGATTACTGGCGAAGTTGTTGAACATGGATCACTCTCTGATGGAAAAATCATAGAAAGGCTTCCTGTTGGATCTCGAGTTGTTGGGACCTTCATCATGCCTTGTGGCAACTGCTCCTATTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCTTATAACCGAGCAAAAGGAACCCTCTATGATGGTGAAACACGACTCTTTCTTCGAGGCAGTGGAAAGCCGGTATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGCATTGACTGTATTACCAGACTCATTGCCATATACCGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCATGCGGCTGAAGTGCGTCCGGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCATTTGGTGCTTCCGATATTATTGCTGTTGATGTCCAGGATGAAAAGCTACAGAAAGCGAAGAAATTTGGTGCTACTCACACTATAAATTCAGCAAAGGAGGATCCGATTGAGAAGATAATTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCTCAGACATTTGCTCAATGCACACAAAGTGTGAAGGATGGAGGAAAAGCAGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGACAGGTGGACATAAATCGGCTTGTTCGTAGAAAGATACAAGTTATTGGCTCATATGGAGGCAGGGCAAGGCAAGATCTTCCCAAGTTAATTAGATTGGCAGAAAACAGGTCTATAATCCTAGCACATAACTCTGCTTCTCACACCCCACAATATGCTTTGGAGTTGCAAGGTGTTGGTGCCCTGAGAACACATATCAATGTCTTCTGA 1278 0.4554 MASSIVRRTITHRLKLPFSSSRCLNHHFVSRHSSIHAVEDAVPFHSQAVGGGGAGLPSYMRGAVYWEPNKPLTIEEFHIPRPKAGEVLIKTKACGVCHSDLHVLKGEIPFSSPCVLGHEITGEVVEHGSLSDGKIIERLPVGSRVVGTFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRGSGKPVYMYSMGGLAEYCVVPANALTVLPDSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVQDEKLQKAKKFGATHTINSAKEDPIEKIIEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGQVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAENRSIILAHNSASHTPQYALELQGVGALRTHINVF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi541g00018 425 FunFam Sorbitol dehydrogenase 237 375 - -
Sebi541g00018 425 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 117 131 IPR002328 GO:0008270|GO:0016491
Sebi541g00018 425 Pfam Alcohol dehydrogenase GroES-like domain 85 215 IPR013154 -
Sebi541g00018 425 Gene3D - 237 374 - -
Sebi541g00018 425 SUPERFAMILY GroES-like 55 263 IPR011032 -
Sebi541g00018 425 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 59 396 - -
Sebi541g00018 425 SMART PKS_ER_names_mod 67 425 IPR020843 GO:0016491
Sebi541g00018 425 CDD Zn_ADH10 60 411 - -
Sebi541g00018 425 Gene3D - 64 395 - -
Sebi541g00018 425 FunFam Alcohol dehydrogenase (Zinc) 64 249 - -
Sebi541g00018 425 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 222 393 IPR036291 -
Sebi541g00018 425 Pfam Zinc-binding dehydrogenase 260 391 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi541g00018 Sebi-Chr541 229612 233932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi541g00018 77 395 Monolignol Biosynthesis Gene Families AT4G37990 26.462 8.21e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi541g00018 - - gmx:100775182 664.07