Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi541g00012 ATGGCGAAATCAAGTTCAACCACGGTAACATTCAAACCAGCATGGGTTCTTCCGTACCGTACCCAGCACATAACAGAGGTGTACACCATGGGTAGAAAACTAGGTCAGGGTCAATTTGGGACAACGTTTCTTTGCACTCACAAGGTAACAGGTGGTAGGTACGCTTGCAAGTCTATTCCGAAACGGAAGCTTCTGTGCAAAGAGGATTACGACGACGTTTGGAGGGAGATTCAGATAATGCACCACTTATCTGAACATCCTCACGTGGTGCGAATCGAAGGAACCTATGAGGATTCCTCTGCTGTTCACCTGGTTATGGAGCTGTGTGAAGGAGGAGAGTTATTTGACAGGATCGTGCAGAAAGGACACTACAGTGAGAGACAAGCTGCGAAGTTGATAAAGACTATTGTTGAGGTTGTGGAGTCTTGTCACTCTCTTGGTGTGATGCATAGAGACCTTAAGCCTGAGAATTTCCTCTTTGATACTGTTGATGAGGATGCTAAGCTTAAAGCTACCGATTTTGGTGAATCCTTTTGTGATGTTGTTGGGAGCCCATATTATGTTGCACCAGAGGTTTTGCGCAAGCTCTATGGACATGAATCAGATGTGTGGAGTGCCGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCCGAAACTGAACCAGGGATATTCCGACAGATTTTACTTGGAAAACTTGATTTTCAGTCTGAGCCTTGGCCTAGTATTTCTGATAGCGCAAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCAGATAAGCCTCTTGATTCTGCGGTTTTATCACGTCTGAAACAATTCTCTGCAATGAATAAACTAAAAAAGATGGCTTTGCGTGTTATTGCTGAGAGGCTATCTGAGGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACAGACAGCAGTGGAAGCATAACATTTGATGAGTTAAAAGATGGCTTGAAGCGAGTAGGATCTGAGCTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATTGATAACAGTGGAACAATTGACTATGGTGAGTTCATTGCCGCCACTGTTCATCTAAATAAGCTTGAGAGAGAGGAAAATCTGTTGTCAGCCTTCTCCTATTTTGACAAAGATGGTAGTGGTTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGACTTTGGTTTAGACGATGTCCACATTGATGAAATGATCAAGGAAATTGATCAAGATAACGATGGACAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATAGGAAGGCGAACTATGAGAAAGACACTAAATTTAAGAGATGCTCTGCAGTTAGTAGGCCATTGA 1452 0.4277 MAKSSSTTVTFKPAWVLPYRTQHITEVYTMGRKLGQGQFGTTFLCTHKVTGGRYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPHVVRIEGTYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAAKLIKTIVEVVESCHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGESFCDVVGSPYYVAPEVLRKLYGHESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGSITFDELKDGLKRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKDFGLDDVHIDEMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDALQLVGH 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi541g00012 483 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Sebi541g00012 483 CDD STKc_CAMK 27 277 - -
Sebi541g00012 483 FunFam calcium-dependent protein kinase SK5 315 387 - -
Sebi541g00012 483 SMART efh_1 325 353 IPR002048 GO:0005509
Sebi541g00012 483 SMART efh_1 397 425 IPR002048 GO:0005509
Sebi541g00012 483 SMART efh_1 431 459 IPR002048 GO:0005509
Sebi541g00012 483 SMART efh_1 361 389 IPR002048 GO:0005509
Sebi541g00012 483 FunFam Calcium-dependent protein kinase 1 30 113 - -
Sebi541g00012 483 Pfam Protein kinase domain 28 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi541g00012 483 Gene3D - 290 390 - -
Sebi541g00012 483 FunFam Calcium-dependent protein kinase SK5 114 290 - -
Sebi541g00012 483 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Sebi541g00012 483 CDD EFh 326 385 IPR002048 GO:0005509
Sebi541g00012 483 Pfam EF-hand domain pair 338 388 IPR002048 GO:0005509
Sebi541g00012 483 FunFam Calcium-dependent protein kinase SK5 391 483 - -
Sebi541g00012 483 SUPERFAMILY EF-hand 317 458 IPR011992 -
Sebi541g00012 483 Pfam EF-hand domain pair 396 457 IPR002048 GO:0005509
Sebi541g00012 483 SUPERFAMILY Protein kinase-like (PK-like) 8 301 IPR011009 -
Sebi541g00012 483 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Sebi541g00012 483 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Sebi541g00012 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Sebi541g00012 483 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Sebi541g00012 483 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Sebi541g00012 483 SMART serkin_6 28 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi541g00012 483 ProSiteProfiles EF-hand calcium-binding domain profile. 321 356 IPR002048 GO:0005509
Sebi541g00012 483 ProSiteProfiles EF-hand calcium-binding domain profile. 431 462 IPR002048 GO:0005509
Sebi541g00012 483 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Sebi541g00012 483 CDD EFh 398 457 IPR002048 GO:0005509
Sebi541g00012 483 Gene3D - 391 483 - -
Sebi541g00012 483 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 452 - -
Sebi541g00012 483 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Sebi541g00012 483 Gene3D Transferase(Phosphotransferase) domain 1 115 289 - -
Sebi541g00012 483 ProSiteProfiles Protein kinase domain profile. 28 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi541g00012 Sebi-Chr541 115786 120097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi541g00012 16 477 EF-hand Containing Proteins AT1G35670 77.282 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi541g00012 Pkinase 2.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi541g00012 K13412 - gmx:100806678 898.656