Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi540g00025 ATGGAGAAACCCCAACTGGTTTTCCTTGTTCTGTTGTTTTCTGTGATGTTTCTGAGTGCATGGTCTCAGGATGATGTTGTGATGGAGGCGCTGAAGAAGGCGATCATCATCCCTCCACAGAGTGGTCTCAAATGGTCAGGCCCAGATGTGTGTCAATGGAGTAAGGTTCAGTGCAATTCAGAGAAGAGGGTCACTGCTATTCAAATTGGAGAACATAACCTTCAAGGCTCTCTGCCTAAAGAACTTGTGCAGCTCTCTGAGTTAAAGCGTTTTGAGTGCATGAAAAATAATCTCTCTGGCCCTTTCCCTTACATGCCAAAGACATTGGAGAGATTGATTATTCATGACAACAATTTCAGCTCCATACCCAGTGATTTCTTCACCAGCATGACCAATTTGCAAGAGGTGAGGATTGACTATAACCCTTTCCCTCCGTGGCAGGTTCCTGTTAGCCTCAAGGACTCTGTGTCTCTTCAGAATTTCTCTGCCATGAACGCTGGTTTTGTTGGGGAAATCCCTGATTTTTTTGGAAAAGATGGTCCTTTCCCAGGATTGATGTTCTTGGGTTTGTGTTTTAATTCTTTTGAAGGTGGGTTGCCTGCAAGCTTTTCTGGGAGTTCTATAGTGTATCTTTTGGTGAATGGTCAGAAAAGTAACTCTAAACTCAATGGTACCCTTGATGTGTTACAGAACATGACATCCCTCCAACAAATTTGGGTACATGGTAATTCATTCACGGGTCCTATACCTGACTTGTCAAACCATGATCAATTGTTTGATGTGAGTTTGAGGGATAACCACTTGACTGGTGTTGTTCCACCCTCTCTCACTGCTCTTCCTGCTCTGCAGGTTGTGAACTTGACCAACAATTGTCTTCAAGGATCCCCTCCCAAGTTCAAAGATGGGGTCAGGGTTGATAATGATATGGAAAGGGGGATCAATAGATTTTGCACAAAGGTGGTTGGTCAGCCATGTAGTCCCCTTGTAAATGCTTTGTTGTCTGTTGTTGAACCTTGGGGTTATCCTCTAAAACTTGCTGATAGTTGGCAGGGTAATGACCCTTGTAAAGATTGGATGGGGATTGTTTGCTCTGGTGGTAACATTTCCATTATTAACTTACAGAACATGGGTCTCTCTGGCAATATTTCTCCTGGTTTTGCAAGCCTTACATCTGTGACAAAGATGATTCTTGCTAACAATGGTCTCACTGGTACTATCCCAAGAGAACTTACTAGTATGCCTCTTTTGAAAGAGCTTGATGTTTCGAATAATAAGTTATATGGTCAGGTACCTTCTTTCCGTGAAGGTGTGGTTGTTAAAACTGGTGGGAATCCTGATATTGGAAAGGATAAACCTCAAGCACCGCCTGGCTCGAATCCTGGAGGGGTTCTGGTATTTGTTATGTATGGTAGAAAACATAAGCGTGCTAGAAAAGTTCAAAGTCCAAATGCAATTGTGGTTTTGAGGGAAGTTACAAACAATTTCAGTGAAGAAAACATATTGGGGAAGGGTGGTTTCGGCACCGTATATAAAGGAGAATTGGATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATCTGGAATGGTGGGTGAGAAGGGGCTGAGTGAGTTCATGTCTGAAATTGCTGTACTTACTAAGGTTCGACACAGGCATTTGGTTGCATTGTTGGGCCATTGCTTGGATGGAAATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAGGGGACTCTTAGTAAACATTTGTTCAATTGGAAAGAAGAAGGGTTACAACCACTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCCCAACAAATTTTTATCCACAGGGATCTTAAGCCATCAAACATCTTGCTTGGAGATGATATGCGTGCTAAAGTATCAGATTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAAGTCTCATTTGAGACTAGACTTGCAGGAACTTTTGGATATCTGGCACCAGAATATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTCTATAGCTATGGAGTGATTCTTATGGAGATGATAACAGGAAAGAAAGCAATTGACAATAGCCAATCAGAAGAGAACATCCACCTTGTTACATGGTTCCGAAGGATGCTACTAAACAAAGATTCATTCAGAAAGGTAATTGACCCAACAATGGATGTTGATGAGGAAGCCTTAGAGAGTTTAAGGACAGTTGCTGAGTTGGCTGGCCATTGTAGTGCAAGGGAGCCCTATCAGCGTCCTGATATGGGTCATGTGGTGAATGTGTTAGCACCACTTGTTGAGATCTGGAAGCCTGCAGAACCTGATGCTGATGATATTTATGGGATTGACTTGGACATGACATTGCCTCAAGCTCTCACCAAGTGGCAGGCTTTTGAAGGAAGGAGCACCATTGATCTCTCATCATCTTCTTCATCAATCCTAACAAGTGGAGATAATACACAGTCAAGCATTCCAACTCGGCCTTCTGGATTTGCAGCTTCCTTTACTTCTTCTGATGGAAGATGA 2553 0.4293 MEKPQLVFLVLLFSVMFLSAWSQDDVVMEALKKAIIIPPQSGLKWSGPDVCQWSKVQCNSEKRVTAIQIGEHNLQGSLPKELVQLSELKRFECMKNNLSGPFPYMPKTLERLIIHDNNFSSIPSDFFTSMTNLQEVRIDYNPFPPWQVPVSLKDSVSLQNFSAMNAGFVGEIPDFFGKDGPFPGLMFLGLCFNSFEGGLPASFSGSSIVYLLVNGQKSNSKLNGTLDVLQNMTSLQQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNHLTGVVPPSLTALPALQVVNLTNNCLQGSPPKFKDGVRVDNDMERGINRFCTKVVGQPCSPLVNALLSVVEPWGYPLKLADSWQGNDPCKDWMGIVCSGGNISIINLQNMGLSGNISPGFASLTSVTKMILANNGLTGTIPRELTSMPLLKELDVSNNKLYGQVPSFREGVVVKTGGNPDIGKDKPQAPPGSNPGGVLVFVMYGRKHKRARKVQSPNAIVVLREVTNNFSEENILGKGGFGTVYKGELDDGTKIAVKRMESGMVGEKGLSEFMSEIAVLTKVRHRHLVALLGHCLDGNERLLVYEYMPQGTLSKHLFNWKEEGLQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQVSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGKKAIDNSQSEENIHLVTWFRRMLLNKDSFRKVIDPTMDVDEEALESLRTVAELAGHCSAREPYQRPDMGHVVNVLAPLVEIWKPAEPDADDIYGIDLDMTLPQALTKWQAFEGRSTIDLSSSSSSILTSGDNTQSSIPTRPSGFAASFTSSDGR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi540g00025 850 Pfam Protein tyrosine and serine/threonine kinase 498 769 IPR001245 GO:0004672|GO:0006468
Sebi540g00025 850 FunFam receptor-like protein kinase FERONIA 468 572 - -
Sebi540g00025 850 Gene3D Ribonuclease Inhibitor 22 323 IPR032675 -
Sebi540g00025 850 SUPERFAMILY L domain-like 55 431 - -
Sebi540g00025 850 Gene3D Ribonuclease Inhibitor 328 451 IPR032675 -
Sebi540g00025 850 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Sebi540g00025 850 FunFam receptor protein kinase TMK1 573 790 - -
Sebi540g00025 850 FunFam Receptor-like kinase TMK4 22 322 - -
Sebi540g00025 850 Gene3D Transferase(Phosphotransferase) domain 1 573 784 - -
Sebi540g00025 850 SUPERFAMILY Protein kinase-like (PK-like) 484 771 IPR011009 -
Sebi540g00025 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Sebi540g00025 850 ProSiteProfiles Protein kinase domain profile. 495 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi540g00025 850 CDD STKc_IRAK 501 774 - -
Sebi540g00025 850 SMART serkin_6 495 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi540g00025 850 PANTHER OSJNBA0070M12.3 PROTEIN 484 850 - -
Sebi540g00025 850 FunFam Leucine-rich repeat receptor-like kinase 327 450 - -
Sebi540g00025 850 MobiDBLite consensus disorder prediction 816 850 - -
Sebi540g00025 850 Pfam Leucine rich repeat N-terminal domain 332 364 IPR013210 -
Sebi540g00025 850 Pfam Leucine rich repeat N-terminal domain 30 59 IPR013210 -
Sebi540g00025 850 Gene3D Phosphorylase Kinase; domain 1 468 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi540g00025 Sebi-Chr540 655841 659369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi540g00025 37 774 Receptor kinase-like Gene Family AT5G65700 30.355 1.50e-82 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Sebi540g00025 PK_Tyr_Ser-Thr 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi540g00025 K00924 - gmx:100776064 1216.06