Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi540g00024 ATGGTAAGCGGTAACAAGTCATACTTCATTAATGTTGGATTCTTTGGTGTGCAAGACACTTTGTGGGATTGTCAAGGAAGACATTACTATAAGTCTTGTACCATCCAAGGTGCTGTTGATTTCATCTTTGGTGCTGCCCAGTCTTTATTTGAGGGGTGTTCCATATCTGTTGTTGGTGGTGCTCTTCCTCCTGGATGGCCAGGATATATCACAGCACAAGGGAGAACAAATCCAAAGGACACAAATGGGTTTGTTTTTAAGAATTGCAATGTCTATGGAGATGGTACAACTTACTTGGGAAGGCCATGGAGAGACTATGCAACAGTTCTTTTCTACAATACCAATATGTCTAACATTATACAACCTACTGGTTGGGATCCATGGTATTTTAGTAGACACGAGAGGGGGAAGTAG 414 0.4155 MVSGNKSYFINVGFFGVQDTLWDCQGRHYYKSCTIQGAVDFIFGAAQSLFEGCSISVVGGALPPGWPGYITAQGRTNPKDTNGFVFKNCNVYGDGTTYLGRPWRDYATVLFYNTNMSNIIQPTGWDPWYFSRHERGK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi540g00024 137 Pfam Pectinesterase 2 129 IPR000070 GO:0030599|GO:0042545
Sebi540g00024 137 Gene3D - 1 136 IPR012334 -
Sebi540g00024 137 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 133 - -
Sebi540g00024 137 SUPERFAMILY Pectin lyase-like 2 129 IPR011050 -
Sebi540g00024 137 ProSitePatterns Pectinesterase signature 2. 35 44 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi540g00024 Sebi-Chr540 642669 643799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi540g00024 1 134 Carbohydrate Esterase AT2G19150 51.111 3.30e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi540g00024 - - aprc:113870328 229.18