Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi540g00023 ATGATGTTTCTAATTCGTTTGTGGTGCTTTGCATGTCTCTTATTTGTTTTAGTGGGGTTGAGATTAGAAGTAGCAAATGCTCAGTTTTACAGGAAAGTTGGAAATAAAGTCCTTCCTTACTGGACAATATTTGTGGATCCATCAGGGCATGGAAACTTCTCTACCATTCAATCTGCCATTGATTCAGTTCCTTCCAACAACAAGTATTGGGTTTCCATCAAGGTCAAGGCAGGAACCTACAGAGAAAAAGTGAACATTCCTGTTGATAAGCCTTATATCATACTAAAAGGAGAGGGAAAGAGAAGAACTCTTGTTGAATGGGATGACCATGATACAACCTCAGAGAGCCCTACCTTCTCAATCATGGCAGATAATATTGTTGTCAAAAGCATGAGCTTTAGGAATTCATACAACAATCCAATAAATAATAAACCGAAGGTGCCTGCAGTGGCTGCAATGGTAAGTGGTGACAAGTCCTATTTTTTCAGAGTTGGTTTCTTTGGTTTGCAAGACACTTTGTGGGATGACAGAGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCTATTGATTTTATCTTTGGTGCTGGCCAATCTTTGTTTGAGAGGTGTTCCATATCTGTTATTGGTGGTGCCTTAGATCCAGGCCTTCCTGGTTTTATCACAGCACAAGGGAGAGTAAACCCAAAGGATTCAAGTGGGTTTGTTTTCAAGGATTGCCATGTGTTTGGAAATGGTACAACTTACTTGGGAAGGCCTTGGAGAGGGTACTCTAGAGTCCTCTTTTACAAGACCAACATGTCCCACATTGTTCAACCTACTGGTTGGGATGCATGGAATTTCCTTGGACATGAGGATCGCATAACATTTGCAGAGTATGGGAATTTTGGGGGTGGTGCTGACACATCCAAGAGAGAGTTGAAATCTGCTATGGAGGAACACGTCGAGCTTATGGCAGATCTTGTTCAGAAGTTCTCTTCCGAGCTTCGTGCTGGTCTTGGCCCCGCTCTAGACAACTTCATGGGCTTTTTCCACGCCATTGATTGGAAGGTCACTCTCCACCCCTTCTCTTTCTTTTTCTTCGTTGCTGTGAAGTGCGAAAATCAGTACTTGTTTGTGCTTTTTGTATTACCATCTCCTTGGATCCCGTTCTTTTCTACTGAGGAGAGGAGAGGAGAGGAGAAAGGTGAACCTTGGCTAATGGGATTGTTAGCATTCCATGTTGGGTTGCTGCTTGTAGCTATCATCTCTAGGAAGAATACCAATTTTCAAATGTTCTTGTTCCTCTTGACGTTGGCTGGTGTATATCTTGCAGAGAGGCTTAATAGCTTTCTGGGAAAAAACTGGAAAAGCTTCTCTGGTCAAAACTATTTTGATCCAAGTGGATTATTTATGTCAGTTCTTTGGTCTGGACCTCTTCTTGTCATTGCTATGATAATCTTGATCAATACGCTCTTCTCCTTATGTTACTTGATTGTTAGGTGGAAAAGAGCTGAACTAAGACATCGTGCAAGAGCTGCTCGTAGTAAGCAGGACTAG 1542 0.4202 MMFLIRLWCFACLLFVLVGLRLEVANAQFYRKVGNKVLPYWTIFVDPSGHGNFSTIQSAIDSVPSNNKYWVSIKVKAGTYREKVNIPVDKPYIILKGEGKRRTLVEWDDHDTTSESPTFSIMADNIVVKSMSFRNSYNNPINNKPKVPAVAAMVSGDKSYFFRVGFFGLQDTLWDDRGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDPGLPGFITAQGRVNPKDSSGFVFKDCHVFGNGTTYLGRPWRGYSRVLFYKTNMSHIVQPTGWDAWNFLGHEDRITFAEYGNFGGGADTSKRELKSAMEEHVELMADLVQKFSSELRAGLGPALDNFMGFFHAIDWKVTLHPFSFFFFVAVKCENQYLFVLFVLPSPWIPFFSTEERRGEEKGEPWLMGLLAFHVGLLLVAIISRKNTNFQMFLFLLTLAGVYLAERLNSFLGKNWKSFSGQNYFDPSGLFMSVLWSGPLLVIAMIILINTLFSLCYLIVRWKRAELRHRARAARSKQD 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi540g00023 513 Gene3D - 40 330 IPR012334 -
Sebi540g00023 513 Pfam Transmembrane protein 18 344 506 IPR026721 -
Sebi540g00023 513 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 307 - -
Sebi540g00023 513 FunFam Pectinesterase 39 328 - -
Sebi540g00023 513 ProSitePatterns Pectinesterase signature 2. 187 196 IPR033131 -
Sebi540g00023 513 SUPERFAMILY Pectin lyase-like 40 307 IPR011050 -
Sebi540g00023 513 Coils Coil 301 325 - -
Sebi540g00023 513 Pfam Pectinesterase 44 308 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi540g00023 Sebi-Chr540 560000 567037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi540g00023 5 286 Carbohydrate Esterase AT2G19150 44.170 2.72e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi540g00023 - - gmx:100819252 501.516