Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00081 ATGGCAATCGCTTCATGCTACTTGATAAAAACAGTTCTTCGGAGACAACACCTCCCACATCGACCAAAAGAAAAGCCTACAGCAAGAGACACAAACCCGGAACACTCCAACACGTGTCGTCAGTTCACCATCGCTGAGATAAGAGCTGCCACCAACAACTTCGACGACGGTTTAATCGTTGGTAAGGGAGGGTTTGGGAACGTGTACAAAGGCCAGATTGACAAGTGTCACACACCAGTTGCAGTTAAGAGACTCAAACCGGGTTCAGATCAAGGTGCACACGAGTTCCGAACCGAGATCAAGATGCTCTCACAGTTTCGCCACCCTCACTTAGTCTCTCTCATCGGTTACTGCAGCGACCACGGAGAAATGATCCTCGTCTACGATTTCATGGCGCGTGGAACTCTACGCGACCACCTCTACGGTCCACACCACCACCATCAACTCTCCTGGAACCAACGACTCGAAATCTGCCTCCCCGCAGCGCGTGGGCTCCACTTCCTCCATGCTGGCATCAACAGGCAGAGCGTGATCCACCGTGACGTGAAGAGCACCAACATCTTGCTGGACGAGAATTGGGTCGCTAAGGTTTCAGATTTCGGGTTGTCCAAGGTTGGGCCCAATGCGTCCCACGTGACCACTGATGTGAAGGGTAGTTTGGGGTATTTGGATCCTGAGTACTACATGAGTCTTTGGTTGACTCACAAATCTGACGTGTACTCTTTTGGTGTGGTTTTATTGGAGGTATTGTGTGGGAGGCCACCTATCAAGAGTAGGGTGGACAAGCACCAGGATTGCTTGGTGACATGGGTGAAGATGTGTTGTCATGAGGGGAAGATTGATCAGACGGTGGATCCTGTTCTGAGGGGAACCATCAGGCCCAAGTGTTTGAAGAAATTTGTGGAGGTTGCATTGAGTTGTTTGCATGATCATGGGAAGCAACGGCCTTTGATGAGAGATGTGGTAAACGGGTTAGAGTGTGCATTGAAAATTCAAAAAGGTGGGGCCCTTGTTTGGGAAAAGAAAAAGAGTAGCGAGGAGATAGCAATGAGCTTGAGGAAAGTTGAGGGTCAAGAAGAATTTGATGAGAAATTTGGGAGAGTGGAGGAGTCTAGTAGTAGCAAGGCTACGACAACATGTAGTGAGGAGGAACAAGCTTTGGTGTATGGGGTTGGAAATCCCAGAGCACGGTAA 1194 0.4941 MAIASCYLIKTVLRRQHLPHRPKEKPTARDTNPEHSNTCRQFTIAEIRAATNNFDDGLIVGKGGFGNVYKGQIDKCHTPVAVKRLKPGSDQGAHEFRTEIKMLSQFRHPHLVSLIGYCSDHGEMILVYDFMARGTLRDHLYGPHHHHQLSWNQRLEICLPAARGLHFLHAGINRQSVIHRDVKSTNILLDENWVAKVSDFGLSKVGPNASHVTTDVKGSLGYLDPEYYMSLWLTHKSDVYSFGVVLLEVLCGRPPIKSRVDKHQDCLVTWVKMCCHEGKIDQTVDPVLRGTIRPKCLKKFVEVALSCLHDHGKQRPLMRDVVNGLECALKIQKGGALVWEKKKSSEEIAMSLRKVEGQEEFDEKFGRVEESSSSKATTTCSEEEQALVYGVGNPRAR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00081 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Sebi53g00081 397 Gene3D Transferase(Phosphotransferase) domain 1 131 350 - -
Sebi53g00081 397 CDD STKc_IRAK 60 326 - -
Sebi53g00081 397 SUPERFAMILY Protein kinase-like (PK-like) 37 323 IPR011009 -
Sebi53g00081 397 ProSiteProfiles Protein kinase domain profile. 54 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi53g00081 397 MobiDBLite consensus disorder prediction 17 37 - -
Sebi53g00081 397 Gene3D Phosphorylase Kinase; domain 1 24 130 - -
Sebi53g00081 397 Pfam Protein tyrosine and serine/threonine kinase 60 324 IPR001245 GO:0004672|GO:0006468
Sebi53g00081 397 PIRSF TyrPK_CSF1-R 142 257 - -
Sebi53g00081 397 PIRSF TyrPK_CSF1-R 295 388 - -
Sebi53g00081 397 PIRSF TyrPK_CSF1-R 51 147 - -
Sebi53g00081 397 SMART serkin_6 54 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi53g00081 397 FunFam Receptor-like protein kinase FERONIA 27 130 - -
Sebi53g00081 397 FunFam Receptor-like protein kinase FERONIA 131 348 - -
Sebi53g00081 397 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Sebi53g00081 397 PANTHER OS07G0166700 PROTEIN 38 332 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00081 Sebi-Chr53 1513102 1514592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi53g00081 5 333 Receptor kinase-like Gene Family AT3G51550 55.287 3.33e-121 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi53g00081 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00081 - - gmx:100792589 531.176