Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00048 ATGTCATTGGCTGCTCCAAGTTCCCTTTTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGGATGGTAGCATCTCAGCCTCTTAAAGCTGGCCAAGTTATCCTCAGAGACTCGCCAATCCTGCTGTATTCTGCCTTGCCCTTTACCACACAGTCTTTGACATCATCCTCTGCATCGGCCTCATGCTTCTGTGACCACTGCTTCAAAACCTTGTCACCATCTTTACAGCAAGACTCTTCATCATCAGCAGTTCTATGCCCTTCTTGTTACCACTATCGCTTTTGCAGCTCAAGTTGTCTCTCAAAGGCACTGAACTCCTCCCATTGTTCTTGGGTATGTCAAGCATTATCACGTCTCCAAGCCAATTCTCTACTGCTTGAACAGCCTCTTGAGCGCCAAGTCCAAGCTCGTTTTCTCATTGCTGCCTACAGTCTTGCCAATATGTCCCCCTCAAACTTTCAAATGTTGCTATCTCTTCAGGGTTCTCCTGATGATGCTACTATTGCTGCAGCTCAGTTCCTTCACCCCCTTATTTCATCCCTCTGTTCACTTGCTCTCATTAGCCCTCAGAATGGGTTTTCTTTGGAACTTACTTCTGCACTTCTGTCCAAGGACAAGCTCAATGCCTTTGGCATAATGCAGCCCTTCTCTGAGGGTGATGAGCAGAGGTCTGTCAGAGCTTATGGTATTTACCCCTACGCCTCCTTTTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACACTAATCCACCTGATGATAGCCATAATACCGACATTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGAGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAGAAGAGATTGATAGAAGACTATGGCTTCACCTGTAATTGTGATCGATGTAATGTTGAATCAAATTGGTCAGATAATGACAGTATTGAAGATAATGCAGAGGATGAAGAAGAGGTTATGGATGAGGACCAATATGAAAATATGGCAGCATCAGACACTGACGATAATCCCAATGGAGATAATAATGATTTCCCACATGCTTATTTCTTTCTAAAATACATGTGTGACAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCCCCACAGGGTGATACTCCATCTAATGTCATGGAATGTAATGTTTGTGGTAAATTGAAGAGTGATGATGACTTTGATGTTGATAAAGGGGAAGATGAAGTTCCCATGGAAGACTGA 1254 0.433 MSLAAPSSLLKVEEIQGRGRGMVASQPLKAGQVILRDSPILLYSALPFTTQSLTSSSASASCFCDHCFKTLSPSLQQDSSSSAVLCPSCYHYRFCSSSCLSKALNSSHCSWVCQALSRLQANSLLLEQPLERQVQARFLIAAYSLANMSPSNFQMLLSLQGSPDDATIAAAQFLHPLISSLCSLALISPQNGFSLELTSALLSKDKLNAFGIMQPFSEGDEQRSVRAYGIYPYASFFNHDCLPNACRFDYVDTNPPDDSHNTDIIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIEDYGFTCNCDRCNVESNWSDNDSIEDNAEDEEEVMDEDQYENMAASDTDDNPNGDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTPSNVMECNVCGKLKSDDDFDVDKGEDEVPMED 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00048 417 SUPERFAMILY SET domain 8 305 IPR046341 -
Sebi53g00048 417 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 410 IPR044238 -
Sebi53g00048 417 Coils Coil 318 338 - -
Sebi53g00048 417 Gene3D - 127 209 - -
Sebi53g00048 417 Gene3D SET domain 21 309 IPR046341 -
Sebi53g00048 417 SMART set_7 8 289 IPR001214 GO:0005515
Sebi53g00048 417 CDD SET_SMYD 207 309 - -
Sebi53g00048 417 Gene3D - 63 122 - -
Sebi53g00048 417 Pfam SET domain 19 282 IPR001214 GO:0005515
Sebi53g00048 417 ProSiteProfiles SET domain profile. 8 283 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00048 Sebi-Chr53 876451 877704 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi53g00048 SET 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00048 - - gmx:100783406 718.383