Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00044 ATGGTTTTTCCTAAACCACCTTCTGAGTCTGATCTCTTTCTTCACTCTAATTTTGCTTCTCGTTATGCCAGGGACTCTCTTCCTAGGTTCAGCATGCCAGAGAACTCAATGCCTAAGGAATCTGCATACCAGAACATACACGATGAGCTACAGCTTGATGCAAATCCAAAGCTGAACTTGGCTTCCTTTGTGACCACATCCATGGAGGAAGAATGCAACAAGCTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGATGAGTACCCTGTTACCACTGATCTTCATAATCGTTGTGTGAACATGATAGCACGTTTGTTCAATGCTCAAATTGGAGAAAATGAAACTGCAATTGGAGCAGGAACCGTTGGATCATCTGAAGCCATAATGCTGGCAGGCCTTGCTTTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCTGAGGGCAAGCCCTATGATAAGCCTAACATGGTCACTGGTGCCAATGTGCAGGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAATTGAGGGAAGTGAAGGTGAGAGAAGGCTACTATGTGATGGACCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACAATTTGTGTGGCTGCAATCTTGGGTTCAACTTATAATGGAGAATTTGAAGATGTCAAGCTCTTAAATGACCTGCTGCTAGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTTGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTATCCAGAGCTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAATATGGGCTTGTTTATGCTGGAATTGGATGGGTTATATGGAGGAGCAAGGAAGACTTGCCAGAAGATCTCGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTGAATTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGCCAAGAGGGGTACCGGAGTATAATGGAGAACTGCAGAGAAAATGCTATGGTGCTGAAGGAACACTTGGAAGAAACTGGATGCTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTAAAAGACAGAAGCCATTATGATGAATTCAAGATATCAGAGATGTTGAGGCGCCATGGTTGGATAGTGCCAGCATATCCAATGCCACCTGGTGCACAGCACATCAATGTGCTCCGTGTGGTGATCAGGGCTGAGTTTTCACGCACACTTGCTGAACGCCTTGTGCTTGACATAAAAAATGTGCTGCATGAGCTTGAGAAACATGTCCCCAAGCACACTGCCAAAGTGAACAACAACATTAAGGAAGAGAAGGACTTGGTTGAAAGTGGGATCAAGAAAACTGCATTGGAAGCACAGAAGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATCATGGCTGCCTAG 1488 0.4388 MVFPKPPSESDLFLHSNFASRYARDSLPRFSMPENSMPKESAYQNIHDELQLDANPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPVTTDLHNRCVNMIARLFNAQIGENETAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNMVTGANVQVCWEKFARYFEVELREVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKEHLEETGCFNILSKDNGVPVVAFSLKDRSHYDEFKISEMLRRHGWIVPAYPMPPGAQHINVLRVVIRAEFSRTLAERLVLDIKNVLHELEKHVPKHTAKVNNNIKEEKDLVESGIKKTALEAQKEIIAQESNKRQKIMAA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00044 495 Gene3D - 361 448 - -
Sebi53g00044 495 FunFam Glutamate decarboxylase 66 360 - -
Sebi53g00044 495 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Sebi53g00044 495 CDD DOPA_deC_like 59 438 - -
Sebi53g00044 495 SUPERFAMILY PLP-dependent transferases 16 446 IPR015424 -
Sebi53g00044 495 Gene3D - 1 65 - -
Sebi53g00044 495 Gene3D - 66 360 IPR015421 GO:0003824
Sebi53g00044 495 FunFam Glutamate decarboxylase 361 448 - -
Sebi53g00044 495 PANTHER GLUTAMATE DECARBOXYLASE 9 489 IPR010107 GO:0004351|GO:0006536|GO:0030170
Sebi53g00044 495 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Sebi53g00044 495 FunFam Glutamate decarboxylase 4 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00044 Sebi-Chr53 809522 812481 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi53g00044 1 483 Calmodulin-binding Proteins AT5G17330 76.844 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00044 K01580 - gmx:100812201 894.034