Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi53g00035 | ATGGACCATAATCGTCGTGATTCATCACAAAACCAGAACACTCAAAAACCAATCAACAATTCATCCATTTGGGCCTCAAGAATTGCTAAGAACAACCTTGAAAGCCTAAAACTTGACAAAATTTGCAGAAACAACAAAGATGGTTCTTCTTCTTCATTGTCTGCATTGATGAGCCCGAGACACTCAAGGATCATTGATCGATGGGCTGCAAGACAAGCTCGAGAAGTGGTGACAACACTTGAGAAAGAGGTTGAGGTGTTTGAAAATTTTCCTTCAAGATCATATATGGGAAAGAGGCTCAACAAATCCAACAGCACCAAACCAAATGCACTAGTTTCACCTGGAAGGACTAGTCTTGATAATGCAAGCTGCAATGAAAATGCATGTTCTGTGGAAGAACAATGTAGGGTCTCAGAAGAAGGGGAATCCAATGATGAACCCCAAGGTAATGAGGAATCATCCCCAGATTGGGAATTTGATAAAACAGGACAAAGTGATCAATCATGTTCATCAAAATTGCAGAGTTCTGATGCTGCTGAAAGAGAAAGGGGAAGGGTTGCAAATATTATCAAGAGACTCTCGGTAACAAATCAAATGCAAAGTCTAGTGTCATCACTGAATGATGACAATGCTCAAGAGCAATGTAGTGGTGTGACAGGTTCTCCATATAGAGAACACAAAGCTTTTGGTCAAGTCATAACTTGCCCACGTATTAGGGGGCGCCAAGCATTCAATGATTTGATTATGCAGTTTGAAAGTGACCGGCATGGAGAGCTCAAAAATCTTGCAGAGAGGGGATCAGTTTCCAAGTTCACACAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTGCAACGTGGAGTAGCAGTTTTTGATCAATCCCACCAGAAATCATCAGTATCTGAAGTGAATAGACAGCAACAAGGATCAGCAATTATGCAACTAAGGGAAAGATTTAAGGTAAGAAATGAACATAGAACTTCAGCTCTGGCAGAAGTATCTGATTCAAGAAGTCCTAGTAGAGAGATAGTAAACAGCACCAGCACCAGCACCACACAAATGGATAACTTCCCCACCTCTAATCAGCTCAGAAAAGATACTCATTACAGGACAGTTTACAGCACTGGTGTTCACTGTAAAGAAACTACACAGAACTCAGTGCCTCAAACTAGTGCAGATGGCAAAGAACAAGCTCATCCAAGTTCAGATGCCACATTCCAAGGATCATTCTTTGAAGCTCAAAATGTTGATACAAAAGAAACTATTGGGGCATCTTCATCCATTGCTGATTCAAATGCAAATGAGACGGCAAATAAGGAAGAGGCAAAGGAACAACAGTATGCTATTGCTGAAACAAGTTATGATGAGATAGTAGAAGAGGATGAAGCCAGTGACCAGAATTATGATGAAGCTCGTTATGACTGGACAAGTCATATTTCTCGGCCTAGGAGCTATTGGGAAGAACTCAGGCAAGAATGGTATAGGGAAATGCTTGATTTTGGTTCAGACAATGATGAGAGACGTAAACTCCTTGAAAGTAGTGGTTCAGAACATGAACTTGGTGATTATTTCAATCAATCCTCACCATCAATGCATACACCTTCCTCAACATGGAGTTATAGAGACAATGATGCTGGTGATGATTCTGATAGAGTTGCATCTGTATCCTCACCACTACCTTCTCAATCTCAGTCTTTCTATCAAGATAGACGGCAGTACTCTTCATCCACAAATCATCATTCCATTGAAATGGAATTTATATATGATATGAGAGGGCAAATGGATCAACTTTTTCATGAGATGTCTGAGCTAAGGAAATCATTAAAGATCTGCATGGACATGCAGATGCAATCACAACAATTCAAGAATCAAGAGGTTCACACAGTTAAGGAAGAAAGGAAGAAGTTCCATAACAAGACACCAAAGAAAGGCAACTGTTGCATTTGCCATGAGAAGAAAGTAAACTCAGTATTATACAGATGTGGGCACATGTGTGCATGTCTCAAGTGTGCCAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCGAGCTCCAATAATAGATGTTGTCCGAGTATATACTAACACAGAACTTTTAGTGGTTGACAGAGTCTAG | 2127 | 0.402 | MDHNRRDSSQNQNTQKPINNSSIWASRIAKNNLESLKLDKICRNNKDGSSSSLSALMSPRHSRIIDRWAARQAREVVTTLEKEVEVFENFPSRSYMGKRLNKSNSTKPNALVSPGRTSLDNASCNENACSVEEQCRVSEEGESNDEPQGNEESSPDWEFDKTGQSDQSCSSKLQSSDAAERERGRVANIIKRLSVTNQMQSLVSSLNDDNAQEQCSGVTGSPYREHKAFGQVITCPRIRGRQAFNDLIMQFESDRHGELKNLAERGSVSKFTQRGRIQSLLRLRLLQRGVAVFDQSHQKSSVSEVNRQQQGSAIMQLRERFKVRNEHRTSALAEVSDSRSPSREIVNSTSTSTTQMDNFPTSNQLRKDTHYRTVYSTGVHCKETTQNSVPQTSADGKEQAHPSSDATFQGSFFEAQNVDTKETIGASSSIADSNANETANKEEAKEQQYAIAETSYDEIVEEDEASDQNYDEARYDWTSHISRPRSYWEELRQEWYREMLDFGSDNDERRKLLESSGSEHELGDYFNQSSPSMHTPSSTWSYRDNDAGDDSDRVASVSSPLPSQSQSFYQDRRQYSSSTNHHSIEMEFIYDMRGQMDQLFHEMSELRKSLKICMDMQMQSQQFKNQEVHTVKEERKKFHNKTPKKGNCCICHEKKVNSVLYRCGHMCACLKCANELQWNSGKCPICRAPIIDVVRVYTNTELLVVDRV | 708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 160 | 175 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 382 | 405 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 334 | 369 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 328 | 369 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 135 | 182 | - | - | |
| Sebi53g00035 | 708 | PANTHER | BNAC05G24000D PROTEIN | 2 | 515 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 520 | 576 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 556 | 576 | - | - | |
| Sebi53g00035 | 708 | CDD | mRING-HC-C3HC5_NEU1 | 645 | 697 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 521 | 544 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 96 | 118 | - | - | |
| Sebi53g00035 | 708 | SUPERFAMILY | RING/U-box | 647 | 694 | - | - | |
| Sebi53g00035 | 708 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 626 | 707 | IPR013083 | - | |
| Sebi53g00035 | 708 | ProSiteProfiles | Zinc finger RING-type profile. | 648 | 687 | IPR001841 | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 95 | 118 | - | - | |
| Sebi53g00035 | 708 | MobiDBLite | consensus disorder prediction | 427 | 449 | - | - | |
| Sebi53g00035 | 708 | Pfam | Zinc finger, C3HC4 type (RING finger) | 645 | 692 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi53g00035 | Sebi-Chr53 | 641171 | 645215 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi53g00035 | 648 | 700 | C3H Transcription Factor Family | AT3G06140 | 39.623 | 6.24e-08 | 53.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi53g00035 | - | - | cam:101500244 | 556.214 |