Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00017 ATGGATTCTAGCGATAATCAAGAAGTTGAAAACTCAGCCATCGGACGAGGGACTCGTCGTCACACAGCTTATCAGAGAGCTAGGCTCGAAGAAGTATTCAGGAATTGTACTCAACATCCAAATGCCAAGCTACGAGATCAATTAGGTGCTGAGCTTGGACTTGATCCAGAACAAGTTGTCTGTGAGCGATCTAGTAACGATTCCCTTCTACTAGAGAATGAAAAGATAAAATCAGAAAACAACCAACTTAGAGAGACTTTGAAAAACTTGCGTTGCTTGTCTTGTGGCGGTCCAACCTTAGTGGAGAAAGATCATGACACTTGTATGCAAATGTTAAAGATGGAAAATGCAATTTTACATGAAAAGCATGAGAAATTCTCCAAGCTTCTGGCAAGTGCAAACAATGGGACAAATCCAAGTTTGCCAAACCAAAATGTTGAAAATCCAACTCTGAATTCTACACTTCCACCATCAACACATCATGATCCCTCACATGGAAGTTTGCCAAACCAAAACTTTGAAGTTCCTAATTCTCTTGAGATAAATAATCCAATTGATCAGCCTCCAACACTTCCATCATCACCACATGATCATCATCCTACACAAGGAAGTTTGCTAAACCAAAACACTGAAATTCCTGCTCCTGATCAACAAATACCTACTATTACTCCTACCATTGATCAAAACATTCCACCTCTTTCTCCTGGTGATGAGGATCTTCTTAATTTTACCCTTGATGAGGATCTTCCTCCTCTTGATATAGATTTTAGTTCACTTGAAGGAATTTGGGATGATTATGATCAACCCAAACATATGGACACAGTTACTACTGAAGTTATGGAAAAAGATTCAATGATGGAGATTGCAATTAGTGCCATGGAAGAATTGACAAGGATTTTGCATATCAATGAGCCCCTTTGGTGTAGGTCTATATGGGATAATAAATTCATTCTTCAACGTGCAGCATATGAAAACACATTTCATAGGTTTAGGCGCTTAGAGGGACCTCGTGCACATACAGAGTCATCAAAAGATTCAGGAATTGTAAGAATGGGTGGGACACAATTGGTTGAAATGTTTTTAGATGCGGACAAATGGGTTGATCTTTTCCCAACAATAATTACAAAAGCACAAACAATCCAAGTATTTGAAAGCGGTTTGCCAGGAAGCCGAAATGGAGCATTGCAACTGATGAATGCAGAAATGCACATTCTTTCACCTTTGGTTCCATCTCGGGAATTCATCTTCCTTCGTTATTGTAAACAAATTGAAGAAGGTGTGTGGGTAATATCAGATGTGTCATTTGATTCCTCAAAATATGAAGCCATTCTTTCTCGAGCTTGGAAGTTTCCTTCTGGATGCATGATTCACCAAAATACCGATGGATCCTGCAGGGTTATGATAAGTTCAGCTAAACAAATGAGGAATGTGATGCAACTTGCTAATCGAATGATTAAGGTTTATCATAAAATTTTGAACATGTCAGGTAACATGAATAATAATGACAAGGTTAGGGTATCTGTTCGCAAAAACACAGAGCTAGGGCTGCCAAAGGGCATGATTGTCAGTGCTGTTACCTCATTTTCGCTTCCAGTATGTCCTCAAAATGTTTTGAACCTTTTGAAGGATATTAATAAACGACCTCAGTGGGATGTTCTATGTAATGACAGTCCAGCACTTGAGATTCAACGCATCTCAACTGGAATATACTCTAACAACTGTACTACAATTATTCAGCCTTCCATCCCTAAAGAGAAAGCTGTGTTGATTCTAGAAGAAAGTTATATAGATCCTTTGGAATCTATGTTGGTATATGCTCCTTTGGATATACAATTATTAAATTTTGCATTAATGGGAGAAGACTCTTCATCATTTCCTCTTCTTCCCTCTGGCTTTACCATAATGAGGGATGATCGATCAAATGCTGTTACAAGACAATCTGGAGGTTCATTGGTAACTCTTGGGTACCAACTACTAGTTTGTTCTACAATAGAGAACCTAAACATGGAAAATGTTGTAGCTTCTGTCAATAAACTTGTCATCTCAACAGTGGAGAAATTTAAGAATCTTCTTTGA 2076 0.3829 MDSSDNQEVENSAIGRGTRRHTAYQRARLEEVFRNCTQHPNAKLRDQLGAELGLDPEQVVCERSSNDSLLLENEKIKSENNQLRETLKNLRCLSCGGPTLVEKDHDTCMQMLKMENAILHEKHEKFSKLLASANNGTNPSLPNQNVENPTLNSTLPPSTHHDPSHGSLPNQNFEVPNSLEINNPIDQPPTLPSSPHDHHPTQGSLLNQNTEIPAPDQQIPTITPTIDQNIPPLSPGDEDLLNFTLDEDLPPLDIDFSSLEGIWDDYDQPKHMDTVTTEVMEKDSMMEIAISAMEELTRILHINEPLWCRSIWDNKFILQRAAYENTFHRFRRLEGPRAHTESSKDSGIVRMGGTQLVEMFLDADKWVDLFPTIITKAQTIQVFESGLPGSRNGALQLMNAEMHILSPLVPSREFIFLRYCKQIEEGVWVISDVSFDSSKYEAILSRAWKFPSGCMIHQNTDGSCRVMISSAKQMRNVMQLANRMIKVYHKILNMSGNMNNNDKVRVSVRKNTELGLPKGMIVSAVTSFSLPVCPQNVLNLLKDINKRPQWDVLCNDSPALEIQRISTGIYSNNCTTIIQPSIPKEKAVLILEESYIDPLESMLVYAPLDIQLLNFALMGEDSSSFPLLPSGFTIMRDDRSNAVTRQSGGSLVTLGYQLLVCSTIENLNMENVVASVNKLVISTVEKFKNLL 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00017 691 Pfam START domain 288 468 IPR002913 GO:0008289
Sebi53g00017 691 CDD START_ArGLABRA2_like 285 468 - -
Sebi53g00017 691 Gene3D - 324 493 IPR023393 -
Sebi53g00017 691 MobiDBLite consensus disorder prediction 132 238 - -
Sebi53g00017 691 Gene3D - 2 88 - -
Sebi53g00017 691 SUPERFAMILY Homeodomain-like 12 60 IPR009057 -
Sebi53g00017 691 MobiDBLite consensus disorder prediction 132 187 - -
Sebi53g00017 691 ProSiteProfiles START domain profile. 278 466 IPR002913 GO:0008289
Sebi53g00017 691 MobiDBLite consensus disorder prediction 1 21 - -
Sebi53g00017 691 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 467 IPR042160 -
Sebi53g00017 691 Coils Coil 66 93 - -
Sebi53g00017 691 SMART START_1 287 507 IPR002913 GO:0008289
Sebi53g00017 691 SUPERFAMILY Bet v1-like 280 467 - -
Sebi53g00017 691 CDD homeodomain 16 59 IPR001356 GO:0003677
Sebi53g00017 691 Pfam Homeodomain 19 59 IPR001356 GO:0003677
Sebi53g00017 691 SUPERFAMILY Bet v1-like 474 656 - -
Sebi53g00017 691 MobiDBLite consensus disorder prediction 196 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00017 Sebi-Chr53 274451 279467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi53g00017 280 691 Homeobox Transcription Factor Family AT1G73360 35.102 6.84e-80 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi53g00017 START 5.6e-24 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00017 K09338 - gmx:100783586 497.664