Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00016 ATGGATTTTCCATCGCTAACTGCTACTGGGTCTGGTGAGGAACAAGATTCTCACCAATCAGGCAAGGATGAAAGGAGCTTCCATCGTCATGCCTCTTATCAGATATCCAAACTTGAAGAAATGTTCAAGGAATACTCACATCCAGACGAAAGTCGACGACTTCAATTAAGTGAAGAGCTTGGACTTGAACCAAGACAAGTAAAATTTTGGTTCCAAAATAGGAGGACAAAAGGAAAGAACATAAGTGAGCGAATGGATAACAATGCTCTTCGGATTCAGAATGAAAAGTTTCGATCAGAAAACATTGTACTCCGAGAGACGTTGAAGGGTGTTCTTTGCTTATCTTGTCGGCGTCCAACCATACGAGAAGATCATGTCCCCGACCATTCCATACAACAAATGAAGATAGAAAATGCACTGTTACGTCAAGAGGATATTCCTGCTCTTGATGATCTAGGTTTTGATGCAATTTCAAATGATGATCATTTGTTGCCCCTCCCATTGAGCCCAGTAATTATTACAGATCCTGAATCTGATAAAGCATTGATGATTGAGATTGCAAATACTGCTATGGAAGAATTAGTAAGGCTTTTGAGTTCAAATGATCCTTTTTGGTTCAGATCTGTAGTTGATGGAAAATTCATTCTCCAACGTGCAACCTATGAAAAGATATTCCATAGAGGTAATCACCTAAAGGGACCCCTTGCACGTATAGAGTCTTCAAAGGATTCACAAATAGTCAACATTGAAGCCACCCAATTGGTTGATATGCTTTTAAATTCGGACAAATGGGTTGATCTTTTCTCAACAATAGTTACAAAAGCACAAACAATCCATGTATTTGAAAGCGGTTTGTCAGGAAGTCGAGATGGAGCTTTGCAATTGATGGATGCACATTTGCACATTCTTTCACCTTTGCTTCCAACTCGAGAATTTGTCTTCCTCCGTTATTGTAAACAAGTTGAGGAAGGTATGTGGGTGGTAGTAGATGTGTCATGTGATTCCTCATCACAATACGGAGCCACTCCTACTCACACTTGGAGGTTTCCCTCTGGATGCTTGATTCAAAAAATCAGTGATGGATCTTGCAGGGTTTCTTGGCTCGAACATGTAGAAGTGGATGAGGAGATTCCAATTGACCATCTTTTTAGAGAAGTTATTCGTAGCAAGAATCCATATGGAGCAGAAAAATGGCTTTTCACACTTGAAAGAACGTGTGAGAGATTTTCATGCTCCACTACACGTGAAAACATACTTGCTTATGACATTGAAGGAGTGATTGAAATACCTGAAGGAAGGAGGAGTGTGATGCGGCTTGGTTATCGTATGCTGAAGAGTTTTTTTGGAACTTTAGACATGTCAAGTAACATGGATATCCCAACAGATTTAACTAGGTTGAGTAATGGTATATTTAGGATATCTGCTCGCCTTAGCACAGAACCAGGCGTGGCAAAAGGCATGATTGTCAGTGCTGCTATCTCCTTTTGGCTTCCTCTTTCTCCTCAAAATGTTTTTGACTTCTTGAAAGATGGTAACAAACGAACTCAGTGGGATGCTCTAAGCTATGGAAATCAAATGCGTGAGATTCAACGCATCTCAAATCGAGATCATCCCGGCAATTGTACTTCAATTTTCAAGCCTTTATTCCCTGAAGGAAGTAATATGTTGATTCTGCAAGAAAGTTACACAGATCCATTAGGATCTTTGGTGGTATTTGCTCCTTTAGATTTATCAACATTGAATTTCGCAATGAAGGGAGAAGACTCTTCAATGTTTCCTCTTTTGCCCTCTGGCTTTAGCATAACAGGTGATGGTCGATCAAATGTTGGCAACTTAGGAGGTTCGTTGGTAACAATTGGGTACCAAATATTGTCTTGCAATCCAACTGAAACGGGACAGCCAGAAAAGGATTCTATAGATGCTGTCACCTCACTTATTGCCTCAACCGTGGATAAAGTTAAAATTGCTCTACATTGTTCCAATTTGGATTAA 1992 0.3996 MDFPSLTATGSGEEQDSHQSGKDERSFHRHASYQISKLEEMFKEYSHPDESRRLQLSEELGLEPRQVKFWFQNRRTKGKNISERMDNNALRIQNEKFRSENIVLRETLKGVLCLSCRRPTIREDHVPDHSIQQMKIENALLRQEDIPALDDLGFDAISNDDHLLPLPLSPVIITDPESDKALMIEIANTAMEELVRLLSSNDPFWFRSVVDGKFILQRATYEKIFHRGNHLKGPLARIESSKDSQIVNIEATQLVDMLLNSDKWVDLFSTIVTKAQTIHVFESGLSGSRDGALQLMDAHLHILSPLLPTREFVFLRYCKQVEEGMWVVVDVSCDSSSQYGATPTHTWRFPSGCLIQKISDGSCRVSWLEHVEVDEEIPIDHLFREVIRSKNPYGAEKWLFTLERTCERFSCSTTRENILAYDIEGVIEIPEGRRSVMRLGYRMLKSFFGTLDMSSNMDIPTDLTRLSNGIFRISARLSTEPGVAKGMIVSAAISFWLPLSPQNVFDFLKDGNKRTQWDALSYGNQMREIQRISNRDHPGNCTSIFKPLFPEGSNMLILQESYTDPLGSLVVFAPLDLSTLNFAMKGEDSSMFPLLPSGFSITGDGRSNVGNLGGSLVTIGYQILSCNPTETGQPEKDSIDAVTSLIASTVDKVKIALHCSNLD 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00016 663 CDD START_ArGLABRA2_like 180 407 - -
Sebi53g00016 663 MobiDBLite consensus disorder prediction 1 15 - -
Sebi53g00016 663 SMART HOX_1 23 85 IPR001356 GO:0003677
Sebi53g00016 663 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Sebi53g00016 663 MobiDBLite consensus disorder prediction 1 29 - -
Sebi53g00016 663 Gene3D - 184 391 IPR023393 -
Sebi53g00016 663 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Sebi53g00016 663 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 658 IPR042160 -
Sebi53g00016 663 SUPERFAMILY Bet v1-like 430 622 - -
Sebi53g00016 663 ProSiteProfiles START domain profile. 176 411 IPR002913 GO:0008289
Sebi53g00016 663 CDD homeodomain 25 80 IPR001356 GO:0003677
Sebi53g00016 663 Gene3D - 9 95 - -
Sebi53g00016 663 SUPERFAMILY Homeodomain-like 17 86 IPR009057 -
Sebi53g00016 663 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Sebi53g00016 663 SMART START_1 185 408 IPR002913 GO:0008289
Sebi53g00016 663 Pfam Homeodomain 29 79 IPR001356 GO:0003677
Sebi53g00016 663 SUPERFAMILY Bet v1-like 178 409 - -
Sebi53g00016 663 Pfam START domain 185 408 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00016 Sebi-Chr53 243408 249258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi53g00016 19 657 Homeobox Transcription Factor Family AT1G73360 41.488 2.28e-173 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi53g00016 START 2.8e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00016 K09338 - rcu:8266520 623.239