Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00015 ATGAGTACAGGAGACAGGTCAAAAATGCATGAGCAAACTGGTTGCATTGATCCCAACACAATGGCAGGAGGTGTAAGCTCTCTAAATGATAGCTTTCCTCAAACTCTGCCAGACCCACCATCATCACTTATGGTTGCAGGAAACACCATAAACAGCAATAATAGCCTTGAAGAGAATTTCAGGCCTTCTGTGGAGGAACTCACCTATCACCATCACAATCTACAGCAACCAGAAGATGTCTCCAACTTTGTAAATGGAGTCACTGCCACATCTATAGACATCACACATCCACAGCATCTTGGTTTGAACATGGGGAACTCCTACAACAACAACATGGACACCCATTTGGTCCAAGATGTCATTGATGGCCTTCCCTATCAGCAGTCAACTTGGGACCCTAGTGTTCAGGAGTTACAAGATATGGACTATACTAATCAGCCAGAACACCACCAACCACATGAACAATTTCAACATATGGAGGTACAAAATTGCAGCCAAAGCTACAATCCCTCTTCCATACTGGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACCTACCCAGATGTTCAGCTTCATCTTTGCTGACCAATCCACCCACCATTTGCATCACAAACCCAACTCAGAAGACACCCAATTTTCATAATTCAATGGGGTTTCTTGGAGACCTTCCAATAGGATCAGAGAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCATTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTCCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAACTCCAGGAATGGTTCTCTTTTTGGTGGAGGGGATGAGATAGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAATAGGGTCACAGCTTCTGTTGGCAAAGGAAGGGAAGGAAAAGGTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGAAAGTACAAAATCTTGAAGGATCTTATCCCAAACCCCACCAAGTCTGATAGAGCATCTGTGGTGGGAGATGCCATTGAGTATATAAGAGAGCTGATCAGAACAGTCAATGAGCTCAAATTATTGGTGGAGAAGAAAAGATATGGGAGGGAGAGGTGCAAGAGGCCCAAAACTGAAGATGATGCTGCAGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGATGCATAAGGACTTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATTGATGATGATGTTACAATCAAACTCTTTCAAAGGAAGAAGATCAACTGTCTAATGTTTGTCTCCAAGGTTCTGGATGAACTCCAGTTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCATCAGTCTATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTCTGGACAGTCAGTATGCAGCAGCAGTTCCACATACAAGTAGCTATTAG 1530 0.4444 MSTGDRSKMHEQTGCIDPNTMAGGVSSLNDSFPQTLPDPPSSLMVAGNTINSNNSLEENFRPSVEELTYHHHNLQQPEDVSNFVNGVTATSIDITHPQHLGLNMGNSYNNNMDTHLVQDVIDGLPYQQSTWDPSVQELQDMDYTNQPEHHQPHEQFQHMEVQNCSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPPTICITNPTQKTPNFHNSMGFLGDLPIGSENTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGGDEIEGDGSQLDMGVLEFNRVTASVGKGREGKGTKHFATEKQRREQLNGKYKILKDLIPNPTKSDRASVVGDAIEYIRELIRTVNELKLLVEKKRYGRERCKRPKTEDDAAESCNIKPFGDPDGCIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLMFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDSQYAAAVPHTSSY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00015 509 Gene3D - 308 382 IPR036638 GO:0046983
Sebi53g00015 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 377 IPR036638 GO:0046983
Sebi53g00015 509 CDD bHLH_AtMYC1_like 316 380 IPR045896 -
Sebi53g00015 509 PANTHER TRANSCRIPTION FACTOR BHLH91 8 502 IPR045895 GO:0006355|GO:0048658
Sebi53g00015 509 SMART finulus 317 366 IPR011598 GO:0046983
Sebi53g00015 509 MobiDBLite consensus disorder prediction 1 30 - -
Sebi53g00015 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983
Sebi53g00015 509 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00015 Sebi-Chr53 219406 221136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi53g00015 14 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 38.679 9.91e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi53g00015 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00015 - - gmx:100782512 820.846