Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00007 ATGGCTGAAACTCACTCTCATGCTCATGCTCATTCTCCTACACCCATAATAACCTACCCTTCTCATGAACAAGTTGGTGGTTTCGATTGGATGGTTCTTGTGGCAGCAATTCTATGTGCCGTTGTTTGTGCTCTTGGCCTTAACACTATGTTACAATGTGTCTTTCAATGTGCCAATCGTGTCCTAACAGAGCCTCTTCAATGGATTGCTTCTCGTAGGCTCAATTCTGGACTTAAGAGGAAAGAAATGGTAGCTTTGCCAACTTTAACATATAGCCATTCATCAGGTGATCCATCTTCTTCAGCTTCAAGTTGTGTCATTTGCTTAGCAGAATTTTGTGATGGGGAACAAATAAGGTTCCTCCCAAAGTGCAATCACCATTTCCATGTGGTTTGTATTGACAAGTGGCTTCTATCTCATTCTTCTTGTCCTACTTGCAGGCATCTTACTCAAGTCTAA 459 0.4183 MAETHSHAHAHSPTPIITYPSHEQVGGFDWMVLVAAILCAVVCALGLNTMLQCVFQCANRVLTEPLQWIASRRLNSGLKRKEMVALPTLTYSHSSGDPSSSASSCVICLAEFCDGEQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRHLTQV 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00007 152 PANTHER RING-H2 FINGER PROTEIN ATL78 10 149 IPR044602 GO:0016567|GO:0016740
Sebi53g00007 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 151 IPR013083 -
Sebi53g00007 152 SMART ring_2 105 146 IPR001841 -
Sebi53g00007 152 SUPERFAMILY RING/U-box 104 149 - -
Sebi53g00007 152 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Sebi53g00007 152 Pfam Ring finger domain 104 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00007 Sebi-Chr53 80552 81010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi53g00007 29 148 C3H Transcription Factor Family AT3G10910 45.312 1.26e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00007 - K19040 tpra:123918739 227.639