Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi538g00035 ATGGGAATGAAGAGCACAGGAGAAGAGATTGTTCAAGTCCAAGGAGGCCACATTGTTCGATCCACAGGTAGAAAAGATCGTCACAGTAAGGTTTACACTGCAAAAGGACCTCCTGATCGCAGGGTTAGGCTATCAGCACACACGGCTATTCAATTCTATGATGTAGAAAAAGTAAAAAGAGAGAGAAATGCAAAGAAATTAGTTACAGAAAGAGTAGAAACACTTGCACCTGGAATCAACCAAAGTGATGGAAAGTGA 258 0.4147 MGMKSTGEEIVQVQGGHIVRSTGRKDRHSKVYTAKGPPDRRVRLSAHTAIQFYDVEKVKRERNAKKLVTERVETLAPGINQSDGK 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi538g00035 85 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 65 IPR005333 GO:0003700
Sebi538g00035 85 MobiDBLite consensus disorder prediction 1 37 - -
Sebi538g00035 85 MobiDBLite consensus disorder prediction 20 37 - -
Sebi538g00035 85 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Sebi538g00035 85 Pfam TCP family transcription factor 23 55 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi538g00035 Sebi-Chr538 669871 670128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi538g00035 1 56 TCP Transcription Factor Family AT2G31070 77.049 1.98e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Sebi538g00035 TCP 2.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi538g00035 - - gmx:100814907 108.997