Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi538g00017 ATGAATAAGATGAGCAACTTGAGTTCTGTTAGCAGCTCTGATCTGATAGATGCAAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGCAAGCCGGACTGGCTAGGTCTGCCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTAATAGAACATCTTGAAGCTAAAGTGGAGGCAAAGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCTACTATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGCTTAAGCAGGCACTTCTTCCACAGGCCATCAAAGGCTTATACAACTGGGACAAGAAAGAGAAGAAAGATTCAAAATGAATGTGACTTGCAAGGAGGAGAAACCAGATGGCACAAAACAGGTAAGACCAGGCCAGTCATGGTGAATGGGAAACAAAAAGGCTGCAAGAAAATTCTAGTCCTCTACACCAACTTTGGGAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCATCAGTACCATCTTGGTCAGCATGAAGAGGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGGCAATGCAATTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGATCAGCCTAATAACAGTAGAAGAGACAGTGGAAGTGGAAGCTGTTCTTCAAAGGAAATAGTTCCTCATAGAGATGAAATGTCTGCTGTTGTTGGAGTCCCTCCAATAACAAGCTTCACTCATGCTTTGGATATTCAACACCTAAAATCAGACCATTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCCACAGCAAGAGAAGTGCAAGCATCTGGATCATGTGAAGAACAACAACATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATAATGGGTTGCACTTCAACTGATATCAAAGAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCATCTTATTGGCCAGACCCTGACAATCCGGATCATCATGGATAG 1110 0.4378 MNKMSNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGDQPNNSRRDSGSGSCSSKEIVPHRDEMSAVVGVPPITSFTHALDIQHLKSDHFSFIPFRKSFDEVGMGEASTAREVQASGSCEEQQHHKLGGRSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi538g00017 369 FunFam NAC domain-containing protein 73 56 212 - -
Sebi538g00017 369 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Sebi538g00017 369 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Sebi538g00017 369 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Sebi538g00017 369 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Sebi538g00017 369 MobiDBLite consensus disorder prediction 215 245 - -
Sebi538g00017 369 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 9 311 IPR044799 GO:0003700
Sebi538g00017 369 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi538g00017 Sebi-Chr538 325712 329104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi538g00017 11 366 NAC Transcription Factor Family AT5G56620 51.810 3.83e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi538g00017 NAM 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi538g00017 - - gmx:100795246 590.112