Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi537g00019 ATGGCTATCCGTGTTACCTTCTCCTTTTCCGGCTACGTCGCCCAGAATCTCGTCTCCTCCGCCGGAGTTCGTGTCGCCAATTCTCGTTGCGTCCAAGAATGTTGGATCCTCTCTCGCTTCTTCGGAAGTAACCAGAAACCAGACATCAACTCCGCCGGCGGGGTACGCAATTTCTATTCCGATCTCAGAAGGCCTAAATCCAATTCTTGGGCTGGAAACTCTGCTTGTGCCTCTGCCTATTCTACCCTCGCCGGAGAAATTCTCGGCGACAGCTGTAAGAACCCAATTATCTTAGGTTTGATCTCGATGATGAAGTCAACGGCTGGTGTTTCTGGGTCATCCACGGCGGCTATGGGTATAATGGGTATTTCGCCTCTTAAGACCTCTTCGATCATACCCTTCTTTCAGGGTTCGAAGTGGCTTCCTTGCAATGAGTCCCTTCCTGACCCCACAACATGGGAAGTGGATAAAGGTGGAACGCGCAGTGTTGTGAACGCGCAATCGGGTTTAAACGCAAGGGATTATGAGAGGCCTAGTTGGCTTTCGCGGTTACTGAATATATGTTCAGAGGACGCCAAGGCTGTGTTCACTGCTTTAACTGTTAGTGTCCTCTTCAAGTCTTTCTTGGCTGAACCTAAATCTATTCCCTCTGCTTCTATGTACCCAACTCTAGAAGTAGGTGACCGTGTTCTAACAGAGAAGGTTTCTTACTTCTTCAGAAGGCCTGATGTTTCAGACATAGTAATATTTAAAGCGCCATCCAGAGCACAGGAATATGGTTATAGTTCATCTGATATATTTATAAAAGAGTTGTGGCTAAAGCTGGTTCGTGGAGGGAAACTATTGGTGAATGGTGAGGCTGAAGAAGAGGAATTCGTTTTAGAGCCTCTTAATTATGAGATAGCTCCAATGGTTGTTCCAAAGGGACATGTTTATGTGCTGGGAGACAATCGTAACAAGAGTTTTGATTCTAGTTACTGGGGTCCACTCCCTATCGAGAACATTGTTGGTAGATCCATGTTTCGCTACTGGCCTCCATCCAAATTGCTGAATGCTAGAAACTCGGGGAAAGCCTCGACATGGATCTATTTGATTCCTTCAGCGGCCATTGAAGCAACTTTAGAAGCTGGGAGGAGACACATTCAGGTCATCATTATCAGTCAGGAAACAACTGTGGGGTCGAAAACTCTCCCTATTGTAATGGCTTGCTGA 1212 0.4653 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWILSRFFGSNQKPDINSAGGVRNFYSDLRRPKSNSWAGNSACASAYSTLAGEILGDSCKNPIILGLISMMKSTAGVSGSSTAAMGIMGISPLKTSSIIPFFQGSKWLPCNESLPDPTTWEVDKGGTRSVVNAQSGLNARDYERPSWLSRLLNICSEDAKAVFTALTVSVLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKVSYFFRRPDVSDIVIFKAPSRAQEYGYSSSDIFIKELWLKLVRGGKLLVNGEAEEEEFVLEPLNYEIAPMVVPKGHVYVLGDNRNKSFDSSYWGPLPIENIVGRSMFRYWPPSKLLNARNSGKASTWIYLIPSAAIEATLEAGRRHIQVIIISQETTVGSKTLPIVMAC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi537g00019 403 PRINTS Bacterial leader peptidase 1 (S26A) family signature 306 325 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi537g00019 403 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi537g00019 403 PANTHER SIGNAL PEPTIDASE I 160 349 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi537g00019 403 FunFam Peptidase/ serine-type peptidase 217 343 - -
Sebi537g00019 403 Pfam Signal peptidase, peptidase S26 192 344 IPR019533 GO:0004252|GO:0006465
Sebi537g00019 403 Gene3D Umud Fragment, subunit A 205 358 - -
Sebi537g00019 403 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252|GO:0016020
Sebi537g00019 403 CDD S26_SPase_I 211 338 IPR019533 GO:0004252|GO:0006465
Sebi537g00019 403 SUPERFAMILY LexA/Signal peptidase 207 350 IPR036286 -
Sebi537g00019 403 ProSitePatterns Signal peptidases I signature 3. 311 324 IPR019758 GO:0004252|GO:0016020
Sebi537g00019 403 NCBIfam signal peptidase I 194 345 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi537g00019 Sebi-Chr537 405350 408031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi537g00019 220 345 MADS-box Gene Family AT1G29960 30.469 3.44e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi537g00019 K03100 - gmx:100817525 483.796