Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi537g00002 ATGCCTAACACAGAGCAGCCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAACATGTTGCATGAAACTTTTGCTACTAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGTTCAAAAGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTAAGGCTATGACTGAAATGAATGGTATTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCGTCTGGCTACCAGCAAGGAGGCCAGTCAAATGGCACATCAAACCAATCTGAAGCTGATTCTGCAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTAATGCTGAAGACCTTAGGCAGCCATTCTCCCAGTATGGTGAGATTGTCTCTGTTAAGATACCTGTTGGAAAAGGGTGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAAAAGCTAAATGGCACAACGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGTTGATTTCGGCAATCCCTGGAGTGGGGCGTATTATGGAGGACCTGTTTATGATGGTTATGGATATGCTTTGCCGCCTTCTCATGACCCGAGCATATATGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGACACCAACAGCAAGTAAGCTAA 792 0.4369 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDNMLHETFATRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMTEMNGIYCSSRPMRIGAATPRKSSGYQQGGQSNGTSNQSEADSANTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRVDFGNPWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPVYGGHQQQVS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi537g00002 263 SUPERFAMILY RNA-binding domain, RBD 122 233 IPR035979 GO:0003676
Sebi537g00002 263 SUPERFAMILY RNA-binding domain, RBD 12 123 IPR035979 GO:0003676
Sebi537g00002 263 MobiDBLite consensus disorder prediction 108 128 - -
Sebi537g00002 263 FunFam Polyadenylate-binding protein RBP47B 16 118 - -
Sebi537g00002 263 SMART rrm1_1 134 201 IPR000504 GO:0003723
Sebi537g00002 263 SMART rrm1_1 29 103 IPR000504 GO:0003723
Sebi537g00002 263 MobiDBLite consensus disorder prediction 104 128 - -
Sebi537g00002 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Sebi537g00002 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 198 IPR000504 GO:0003723
Sebi537g00002 263 Gene3D - 14 122 IPR012677 -
Sebi537g00002 263 Gene3D - 123 235 IPR012677 -
Sebi537g00002 263 FunFam Polyadenylate-binding protein RBP47 119 235 - -
Sebi537g00002 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 205 IPR000504 GO:0003723
Sebi537g00002 263 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 209 - -
Sebi537g00002 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 107 IPR000504 GO:0003723
Sebi537g00002 263 CDD RRM2_SECp43_like 27 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi537g00002 Sebi-Chr537 68539 70789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi537g00002 30 213 Eukaryotic Initiation Factors Gene Family AT4G34110 29.319 4.67e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi537g00002 - - lja:Lj1g3v1648780.2 486.878