Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi536g00026 ATGCCGCCTTTAGATCTTAATGAAGATCACACTGATCACCAGTTCTTCAGTACAAACCATCAAGCCTCTTCTTCATCTTCTTATCTATCATATTCCATACTCTTCAACACGGATCAAGATCAAGGAGGATCTTACTATTGGGGACCAAAGCAGTTACAATGTGATGAAGAGGCCGAGAAGATTGTTCCTATTTCTATCACATCATGGGATCATCCAGCAGTTGAAAAGAATGGAAACAGCAGTGACGACCTGAAGAAAGAAGAAGGTGGGAAAGATCAAAATATTGAAGGTGAGGATATGAATTCAATGAAGTGGATGCCTTCAAAGATGAGAATCTTGCGGAGGATGATGCTATCCGATCAAACGGGTTCTTGTGATGAAAAGCAAAATTCATCACCACCTCTAGGAACAGCCAGCAACAACAATTCTTCAAACAATATCAATACTGGTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCCAAGCATGGTCGTGTTACAAAGAAGACAGATGTGTGGAGCCTTGGGATACTGATTTTGGAGTATCTAACAGGTAAGCTCCCTGCTAACTTTCTACCACAGGAAATGGGGGCTACCAAAAACAGTGAGGGGGAGATGATGAAGCTTTTGAGGATTGCATTGACTTGTTGTGAATGGGATGTGGATAAGAGATACGATTTGATAGACGCTGTAGACAAAATTCAAGAGGTAAAGGAAAGAGATAGTGATAAGGATTACTATTCTTCTTTTGCTAGTGAAGCTGACATGAAATCAAAAGCTTCATCAGGTGAAGTCCGTTTCTCCAAAAATGGTTGA 846 0.4173 MPPLDLNEDHTDHQFFSTNHQASSSSSYLSYSILFNTDQDQGGSYYWGPKQLQCDEEAEKIVPISITSWDHPAVEKNGNSSDDLKKEEGGKDQNIEGEDMNSMKWMPSKMRILRRMMLSDQTGSCDEKQNSSPPLGTASNNNSSNNINTGRVCADCHTTKTPLWRTGPTGPKHGRVTKKTDVWSLGILILEYLTGKLPANFLPQEMGATKNSEGEMMKLLRIALTCCEWDVDKRYDLIDAVDKIQEVKERDSDKDYYSSFASEADMKSKASSGEVRFSKNG 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi536g00026 281 ProSiteProfiles GATA-type zinc finger domain profile. 147 170 IPR000679 GO:0006355|GO:0043565
Sebi536g00026 281 MobiDBLite consensus disorder prediction 122 147 - -
Sebi536g00026 281 SMART GATA_3 147 187 IPR000679 GO:0006355|GO:0043565
Sebi536g00026 281 Gene3D Transferase(Phosphotransferase) domain 1 173 258 - -
Sebi536g00026 281 Pfam GATA zinc finger 153 172 IPR000679 GO:0006355|GO:0043565
Sebi536g00026 281 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 7 172 - -
Sebi536g00026 281 MobiDBLite consensus disorder prediction 76 98 - -
Sebi536g00026 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 171 - -
Sebi536g00026 281 MobiDBLite consensus disorder prediction 120 147 - -
Sebi536g00026 281 SUPERFAMILY Protein kinase-like (PK-like) 172 247 IPR011009 -
Sebi536g00026 281 Gene3D - 147 172 IPR013088 GO:0006355|GO:0008270
Sebi536g00026 281 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi536g00026 Sebi-Chr536 524984 526271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi536g00026 168 274 Receptor kinase-like Gene Family AT5G35390 46.970 1.18e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi536g00026 GATA 1.6e-06 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi536g00026 - - gmx:100780875 176.022