Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi536g00021 ATGACTGGCAGAGAAATCCTCAACAAGATGAAGGTGAAAGCAGGGTTTGGAACATCAGCACCAGACACTACTGGGAAGGGAAAAAGCAAAATATCAAAACATATCACACATGGCTTTCACTTGGTGAAGGGAAAATCAAGTCATCCTATGGAAGATTATTTAGTTTCAGAATTTAAGAAAGAAAAGGAAAAAGAATTAGGTTTGTTTGCTATATTTGATGGCCACTTAGGCCATGATGTTGCAAGCTATTTGCAGAACCACCTTTTTCAAAATATCTTAAAACAGCATGACTTCTGGACTGAAACAGAAAATGCAGTAAAGAGAGCTTATCTTGAAACAGATGAGAAAATACTAGAACAAGCACTTGTTTTGGGACGAGGAGGATCAACAGCAGTAACTGCAATTTTGATTGAAGGTCAGAAACTTGTAGTAGCAAATGTTGGTGACTCTCGAGCTGTTATTTGTGAGAATGGAAAGGCCAGGCAACTATCAGTTGATCATGAACCAAGCAGAGAAAAAAAATCTATTGAAAGCCGTGGTGGCTTTGTATCAAATATTCCAGGAGATGTTCCTCGTGTAGATGGACAGCTGGCAGTAGCAAGGGCTTTTGGTGACAAGAGCTTGAAGATGCATCTTAGTTCGGAACCTGATGTGGTTGTAGAGGAGGTAGATCAACAACATACAGAGTTTCTTATTCTGGCTAGTGATGGAATATGGAAGGTGATGTCAAACCAAGAAGCAGTGGATTCTATTAGACAAATAAAGGATGCTCAGGCAGCAGCAAAACATTTGATTGAAGAGGCTATTTCCAAGAAAAGTAAGGATGACATATCCTGCATAGTTGTGAAGTTCCAATGA 858 0.3939 MTGREILNKMKVKAGFGTSAPDTTGKGKSKISKHITHGFHLVKGKSSHPMEDYLVSEFKKEKEKELGLFAIFDGHLGHDVASYLQNHLFQNILKQHDFWTETENAVKRAYLETDEKILEQALVLGRGGSTAVTAILIEGQKLVVANVGDSRAVICENGKARQLSVDHEPSREKKSIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKMHLSSEPDVVVEEVDQQHTEFLILASDGIWKVMSNQEAVDSIRQIKDAQAAAKHLIEEAISKKSKDDISCIVVKFQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi536g00021 285 SMART PP2C_SIG_2 47 284 IPR001932 -
Sebi536g00021 285 CDD PP2Cc 43 284 IPR001932 -
Sebi536g00021 285 PANTHER PROTEIN PHOSPHATASE 30 284 IPR015655 GO:0004722|GO:0006470
Sebi536g00021 285 ProSiteProfiles PPM-type phosphatase domain profile. 36 284 IPR001932 -
Sebi536g00021 285 SMART PP2C_4 26 282 IPR001932 -
Sebi536g00021 285 Pfam Protein phosphatase 2C 46 277 IPR001932 -
Sebi536g00021 285 Gene3D - 13 285 IPR036457 -
Sebi536g00021 285 SUPERFAMILY PP2C-like 29 284 IPR036457 -
Sebi536g00021 285 FunFam Probable protein phosphatase 2C 39 26 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi536g00021 Sebi-Chr536 433104 435468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi536g00021 25 285 PP2C-type Phosphatase Gene Family AT4G28400 77.778 5.35e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi536g00021 K17506 - gmx:100819846 476.863