Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi536g00009 ATGCTTGCGGTGTCACCTTTAAGCACAAAAGATGAAATCAAAGAAGAGACGGAGAGCTTTTCGATTGGAACTTCAACAACCGCTGATGTCATCGGTGACTTCGGTGACTTTTCCGACGGGAGTTTGTTGGAGAGCATCAACTTCGACGACCTCTTTGTCGGCATCAGCGTCGACGGTGATGTGTTGCCGGATTTGGAAATGGACCCGGAGATTTTCGCCGAGTTTTCCGTCAGCGGCGGCGAGGAATCGGAGATAAACTCATCGGCTTCGGTGGAAAATAACAATAACTGCAAAGGTGATGATGATAAAAGTTTGAAGAAAGATGACGAAGATAAAACGGCAACAACAGAAACGTCTTCTGCTTCGGGTCAAGGTTCGGGGTCAACGAGCCGAGGGGAAGAGATAGTGAGTAAAAGAGATGAATCGGCGGTGGTGAATCCGTCGCCAAAGGATGGTGGAAAAGGAAGAAAATCATCATCAGCTCAAGCAAAGAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACACCAGAATTGCATAGGCGATTTGTGCAAGCTGTGGAACAGTTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGTCATAACATTGCGAGCCACCTTCAAAAATATAGATCCCATAGAAAACATTTGTTGGCGCGTGAAGCTGAAGCAGCAAGCTGGAATCAAAAGAGACAACTGTATGGTGGAGGAGGGAAGAGAGAGGTGAGTCCATGGCTAGCACCAACCATGGGTTTCCCTCCAATGACTCCTACAATGCACCATTTTAGACCCTTACATGTATGGGGTCATCCTTCGATGGACCAGTCATTTATGCACATGTGGAATAAACATCTACCACATTCGCCGCCTCCGCCGCCGCTCTCATGGCCACCAGCGGCGGCTCCTCCTCCACCACCTCAAGACCCTTCTTTTGGCACGACTCCAAACGCACTAATCCCAGGAACACCTTGTTTTCCACAACCTCTGACAACAGCAAGATTTGGATGTCCACCTGTCCCTGGCATCCCACCCCATGCCATGTACAAAGCAGATCACGGCATTGGCGTCCCTGGTCCCGGACCCTTCTCCGATTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTATTGGAGATGTTTTATCAAAACCATGGCTGCCGCTGCCACTTGGACTTAAGGCTCCAGCACTTGAAAGTGTACTGGGTGAATTACAGAGACAAGGAGTTTCAAGCATTCCACCCTCTACTTGTGCTTGA 1290 0.4884 MLAVSPLSTKDEIKEETESFSIGTSTTADVIGDFGDFSDGSLLESINFDDLFVGISVDGDVLPDLEMDPEIFAEFSVSGGEESEINSSASVENNNNCKGDDDKSLKKDDEDKTATTETSSASGQGSGSTSRGEEIVSKRDESAVVNPSPKDGGKGRKSSSAQAKNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQKRQLYGGGGKREVSPWLAPTMGFPPMTPTMHHFRPLHVWGHPSMDQSFMHMWNKHLPHSPPPPPLSWPPAAAPPPPPQDPSFGTTPNALIPGTPCFPQPLTTARFGCPPVPGIPPHAMYKADHGIGVPGPGPFSDFHPSKESIDAAIGDVLSKPWLPLPLGLKAPALESVLGELQRQGVSSIPPSTCA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi536g00009 429 NCBIfam myb-like DNA-binding domain, SHAQKYF class 171 225 IPR006447 GO:0003677
Sebi536g00009 429 FunFam Two-component response regulator 167 230 - -
Sebi536g00009 429 MobiDBLite consensus disorder prediction 80 95 - -
Sebi536g00009 429 MobiDBLite consensus disorder prediction 300 326 - -
Sebi536g00009 429 Pfam Myb-like DNA-binding domain 174 223 IPR001005 -
Sebi536g00009 429 MobiDBLite consensus disorder prediction 1 21 - -
Sebi536g00009 429 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 428 IPR044825 GO:0003700|GO:0045893
Sebi536g00009 429 MobiDBLite consensus disorder prediction 300 323 - -
Sebi536g00009 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 227 IPR017930 -
Sebi536g00009 429 MobiDBLite consensus disorder prediction 116 132 - -
Sebi536g00009 429 SUPERFAMILY Homeodomain-like 169 228 IPR009057 -
Sebi536g00009 429 MobiDBLite consensus disorder prediction 77 175 - -
Sebi536g00009 429 Gene3D - 168 229 - -
Sebi536g00009 429 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi536g00009 Sebi-Chr536 229776 233617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi536g00009 1 301 G2-like Transcription Factor Family AT5G44190 44.340 1.22e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi536g00009 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi536g00009 - - aprc:113858121 537.339