Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi536g00007 ATGGAGGGTGGTTCGGAGGGAGAGATGAAGAAGCCACCGGAGGGGGAGAACAAGGTCAAGCGCAAAATGAAGACTGCTTCGCAGTTGGAGGTTCTGGAGAAAACATATGCTGTGGAGGCCTACCCTTCGGAGGCGTTGCGGGCTGAGCTATCTGAGAAGTTGGGTCTGTCTGACCGTCAATTGCAGATGTGGTTCTGTCACCGGAGACTGAAGGACAGAAAGGCTGTGTCAACAGATAAGAAGCTGCAAAATGATCCCCCTCCAGCTTCGGCTCCGTTGGGGGAGTGTGTTGAGCAAATACCAGTGGCTGATGTTAGCCATGAACGTAGTTTGGCTTCTGGGTTGAAGCCATTTGGTCATCTGGACTCGCGGCGAGTTATGCCAAGGCCTGGGATGATGGTCATTCCTAGGATGGGAGCTGGATTGCATGCAATGGAGAGCAGCAGTTACTATGAACCTCATCAGGCCATAGAGGAGCTGAGAGCTATTGCATTTGTGGAGAGACAGTTAGGAGAGCCATTAAGGGAGGATGGACCGATTCTAGGGATGGAATTTGATTCCTTGCCACCGGGTGCATTTGGTGCACCAATAGGGGCAGTGACAATGGGGCAACACAGGCAATCTGGAAGGCCTTTTGAGGCAAAAATTTATGAACAGCTGGACAAGGGCGTTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAACAGCCAACTGTTAGAAATGAAATGAATGAGCGAGTTGCCGCCCCTATCCACTATAATTCTCTTGATGGCATTCCACATGCTAGGACTATATTATCTAGTGCACGATCTTTCCATAAGGGGAATGAATCTGCACCTTATGGGTATGGAGTTCAAGGTCAGATACCTGCTCTAAATCTTTTGTCTCAGCAAGGTAGGCAGAATCATCTTTTGCCTTCTGCTTCAGGAGGGACTGACGATATTCCACGACAGAACCAATTTGTTGATGTAACTGTTGGTACTCATAGTGAGGCTCACCCAGTAACTCTTATTGACGGCCCTCTAATACCATCTGATAGGAGGATTATCCATGAGGAGGAACTTTCAAGGTTTCAAAGGAAGCGGAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAAGCACAAGAGAAAAGAAATAGAAAAGAGCTTGAAAAGCAGGATATCCTAAGGCAAAAGGTTTGA 1188 0.4756 MEGGSEGEMKKPPEGENKVKRKMKTASQLEVLEKTYAVEAYPSEALRAELSEKLGLSDRQLQMWFCHRRLKDRKAVSTDKKLQNDPPPASAPLGECVEQIPVADVSHERSLASGLKPFGHLDSRRVMPRPGMMVIPRMGAGLHAMESSSYYEPHQAIEELRAIAFVERQLGEPLREDGPILGMEFDSLPPGAFGAPIGAVTMGQHRQSGRPFEAKIYEQLDKGVSRTLHEYQFIPEQPTVRNEMNERVAAPIHYNSLDGIPHARTILSSARSFHKGNESAPYGYGVQGQIPALNLLSQQGRQNHLLPSASGGTDDIPRQNQFVDVTVGTHSEAHPVTLIDGPLIPSDRRIIHEEELSRFQRKRKNEEARMQRELEAQEKRNRKELEKQDILRQKV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi536g00007 395 CDD homeodomain 18 74 IPR001356 GO:0003677
Sebi536g00007 395 SUPERFAMILY Homeodomain-like 12 74 IPR009057 -
Sebi536g00007 395 Gene3D - 9 89 - -
Sebi536g00007 395 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Sebi536g00007 395 MobiDBLite consensus disorder prediction 75 94 - -
Sebi536g00007 395 MobiDBLite consensus disorder prediction 360 395 - -
Sebi536g00007 395 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 394 IPR044977 GO:0006357
Sebi536g00007 395 SMART HOX_1 17 79 IPR001356 GO:0003677
Sebi536g00007 395 Pfam Homeodomain 20 74 IPR001356 GO:0003677
Sebi536g00007 395 Coils Coil 349 394 - -
Sebi536g00007 395 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi536g00007 Sebi-Chr536 109859 113192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi536g00007 1 394 Homeobox Transcription Factor Family AT5G44180 43.951 4.22e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi536g00007 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi536g00007 - - lja:Lj0g3v0211739.1 593.964