Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi535g00050 ATGACTGTCGTTATGGATAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAGATTGAAAGTGAAGATGATTGTGAGAATGCATTTCATTCTGAGTCTCGTGAATTTGTTCTTGGGGTGGATTCTGAGGCAGATTTTGTTGACCTTAATCCTGAGTTGTTAACTGAGGAAAACGTGAAGAATTTAAATTTTCCTAATTTGGATGTTGCTTATAAATTTTACAATAATTGGTATGGAAAATTGAAGGGTTTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGGAATGGAAGAAATTATTGAGAAGACCTATCTTTGCCATAGGGAAGGAAAGAGACCAATTAATACGAATGAAAGGACCGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGTTGTTGGAACGTGACCAAGTTTTGTGATGCCCATAATCATGAAATGCTGAACCCCAAATACACAGGGATGCTACCGGCTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACCACACCTCAAATTTATGGGTCATTTGCCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGCTAAGGGTGCAATTAAGCACCTACGTGAAAGGGAGCAGAATGAAGGGTCAATGTTTTGGAGGCACATGACTCAGAAGGCCGACTCCAGCGATTATTTTGGTGTGACGGTGTCTGAGTTTAAAAACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAATTGTATGAGAAAAAGAGGATGTGGGCCACAACATACATTAGGGGAAATTTCTTTGTCGGGTTTAGGACAACGTCTCGATGTGAGGGGCTTCATGGGCAACTTGGGAAGTTTGTTCACTCCCGGACCGATTTGGTTGGTTTTCTGAAAAATTATGGTCGTTTCCTTGAAGTACTAAGGTATAATGAGTTAGAAGCAGATTTTGAATCAGTACGTGGTGAAATGGTCCTTGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGGTACGGCCCGCCCTTGCCAGGGGAAGCACTATGAGGGTCATGGGTTGTACACAGTTGATGTCACAAACCATTTTCACAGTGTCCAAGTATGGTAGATCACAGAAGGAGTGGCAAGTGTCATATATTGCAGAACCACTTTTCCTTAAATGTTCTTGTCAAAGAATGGAATCTTTTGGTCTTCCTTGTGATCACATAATTGGTGTGATGGTACACTTGAACATACAAGAGATGCCGAAGTGTCTCGTGCTCAGTAGGTGGACCATGGGTGTGAAGGATAGTGCTTATGAAATTAGGGATGGACGCAACTCGATTTGGGATTCTGTGTTTGATGCACGTTGTGGTTATTTGGACTTTTTGTGTAAGAAGATGAATAGATTGGGGGGTAGATCTGCTACAAGATTCAACGAGATTAAGGACTGGGTTAGCACAAAAATAAACCTGTATAGTGAAGCACATTTGACTAGTGGTGATTGGAATGAAAATGGTACGGATGAAGGTGGTCCAACATTGAAAGATCCAATTAGAGTTGGTTCAAAGGGATGTGCAGCTGGTTCATCGTCACAAGCAAGAAGACGACCCCACAAATGTAGGCAATGTGGGGTTGCTGGTCACAACCGAACTACTTGTCCAAAGAAGACTAAATATGAGGCGTCTATAGAGTTGGGAGAGGTACTATTCAGTGCTGGATACAGATGGAGCCGCCCTCGTGGATATCATGATCATTGTTGTTTTCATTCTCAATGTAACCGAAATTGGATCATTTTAATTCAAAACAGTGGCAAAGATGCTGAAGAACAATTTAGGCGTGCACGTTGTTGA 2007 0.4145 MTVVMDNINENVGENVVGLEEIESEDDCENAFHSESREFVLGVDSEADFVDLNPELLTEENVKNLNFPNLDVAYKFYNNWYGKLKGFSARKGKERKNGMEEIIEKTYLCHREGKRPINTNERTGKKKREAKPETRCLCPAKMKVRLDVHSGCWNVTKFCDAHNHEMLNPKYTGMLPAHRKLSEADILEMNNMRNAGITTPQIYGSFASQSGGYNNVGFRKRDLYNEIGRQRMLQLSDAKGAIKHLREREQNEGSMFWRHMTQKADSSDYFGVTVSEFKNRWEVMVKEFRLEENNWVKELYEKKRMWATTYIRGNFFVGFRTTSRCEGLHGQLGKFVHSRTDLVGFLKNYGRFLEVLRYNELEADFESVRGEMVLETNLHALERSASKIFTKEVFILVRPALARGSTMRVMGCTQLMSQTIFTVSKYGRSQKEWQVSYIAEPLFLKCSCQRMESFGLPCDHIIGVMVHLNIQEMPKCLVLSRWTMGVKDSAYEIRDGRNSIWDSVFDARCGYLDFLCKKMNRLGGRSATRFNEIKDWVSTKINLYSEAHLTSGDWNENGTDEGGPTLKDPIRVGSKGCAAGSSSQARRRPHKCRQCGVAGHNRTTCPKKTKYEASIELGEVLFSAGYRWSRPRGYHDHCCFHSQCNRNWIILIQNSGKDAEEQFRRARC 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi535g00050 668 SMART 26again6 444 471 IPR006564 GO:0008270
Sebi535g00050 668 MobiDBLite consensus disorder prediction 554 585 - -
Sebi535g00050 668 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
Sebi535g00050 668 ProSiteProfiles Zinc finger SWIM-type profile. 433 469 IPR007527 GO:0008270
Sebi535g00050 668 SUPERFAMILY Retrovirus zinc finger-like domains 572 612 IPR036875 GO:0003676|GO:0008270
Sebi535g00050 668 PANTHER OS01G0519700 PROTEIN 272 503 - -
Sebi535g00050 668 Pfam SWIM zinc finger 441 469 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi535g00050 Sebi-Chr535 680417 683165 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi535g00050 FAR1 4.1e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi535g00050 - - ahf:112708893 298.13