Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi535g00047 ATGGATCCCTCACTTGCTGAATACATTCGTGAGAGACAGGAAAACTTCACAGCCAAGGTGATATCAACCCAAAACAATATAATCATCAATGGTACTTTCTATAGTCACTGGGAAACAAATCTTTTGAATAGTTCTGTAACCTTGACTGACCCTGCTGGTAATATCCACAATGTTTGGGTTAGGAACAATAAAAAAATTGGCTTATTTAGGGAAGGGGTGCGTGAGTTCATAGACTTTTATGGGTTAAACGGAACTTATAGTGTAAATTTTAATTTCAATGGAAGTAGTAATTTTGATATTAAGATCATGAACTCTGAGTGTTTGGAAATTCCCTACACCCCTTCCTGCATTGAATCTCCTCCAAGTGTGGTGTCTCTATTTCGTCATGCACCTACAATTGATGAGTTCACTCCACAAGAGAATATGCCTAATCTGGAGGCTGCAGCGACTCACCCCCTGCCAAGCCAATCAACACAAATACCTGAAAGCCCACTTGAAGAGGCGCATAATCGAAGCCCTGTCAACCCACAGAGAAATGATGAAGAAGAAAATGTTAATGATGAAGCTGGCATGCTCCTTTGGCGAGCTAGGATTACAAAGGCAATTGAAGGAGGGAAACAGGGGGCGGTAATCCCTAAAAGAATTGTTACTGAATTCTTAGAGCAAGGCCAGCAGGTGGTTCATGTCATGTTACCACAAGGAGCAGTGCAACCATGGGCCCTCTTGTGGAACACTATACTTCATAATCACTGTAAGCTTGGTCAGGGATGGTACCAATTCTGCAGGGAAGAGAGTCTTAAAAAAGGTGATGAAGTTTCATTTTGGAAATTTAATGGTGAACAATTCTGGAGGATAGTGGTCAATCGAGCTAACCAGTAG 879 0.4164 MDPSLAEYIRERQENFTAKVISTQNNIIINGTFYSHWETNLLNSSVTLTDPAGNIHNVWVRNNKKIGLFREGVREFIDFYGLNGTYSVNFNFNGSSNFDIKIMNSECLEIPYTPSCIESPPSVVSLFRHAPTIDEFTPQENMPNLEAAATHPLPSQSTQIPESPLEEAHNRSPVNPQRNDEEENVNDEAGMLLWRARITKAIEGGKQGAVIPKRIVTEFLEQGQQVVHVMLPQGAVQPWALLWNTILHNHCKLGQGWYQFCREESLKKGDEVSFWKFNGEQFWRIVVNRANQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi535g00047 292 ProSiteProfiles B3 DNA-binding domain profile. 194 291 IPR003340 GO:0003677
Sebi535g00047 292 SUPERFAMILY DNA-binding pseudobarrel domain 197 287 IPR015300 -
Sebi535g00047 292 MobiDBLite consensus disorder prediction 150 165 - -
Sebi535g00047 292 Gene3D - 8 107 IPR015300 -
Sebi535g00047 292 Gene3D - 196 292 IPR015300 -
Sebi535g00047 292 MobiDBLite consensus disorder prediction 150 184 - -
Sebi535g00047 292 SUPERFAMILY DNA-binding pseudobarrel domain 21 112 IPR015300 -
Sebi535g00047 292 PANTHER B3 DOMAIN-CONTAINING 18 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi535g00047 Sebi-Chr535 673574 675032 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi535g00047 42 274 B3 DNA Binding Superfamily AT3G18990 21.502 4.08e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi535g00047 - K16311 lja:Lj6g3v0497350.1 62.7734