Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi535g00038 ATGGCTTGGTTGGAATCCAGAATACGGATTGTTTGCATTATTGGGGAAGTTGTTGTAATGGTGGGTGTCACACCAAGGACTTCAATTTGGGTTCTGGGAAAAAGAGTCACACTGAAGGAGCACAAATATCCGACAGAGGAAATGAAATCAGAACTTTCTGCGGAGTTAGGGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAATCAGCTGCTAATGGACGACAAGATCGATCGAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGACAAGATTCATGTGGAAGCAGTAAATATGGTGATCATAAGTATCTGGATCCTAAAGAGGTTGAGAGCCATGGCCTCCACAATCATGATTTTCCAACTGCAGATATGACCTACGGACGTATGAATCATTATCCAGAAAATGTTAGCGAAATGGATGACACATCATCTGAGAGCTCATTTCTGCAAGAACGGTTTTCTCAAGGCCAGGAGCCCTACGATACGGAGCCTTCTAGATATCTAACACCTAGCAGAACTCTTCCACCCCTAAATCCCAAGGGTGCAATTAACATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGCGAGATAGAAAATGCTGCTATCACTGCCGTTAAGAAGCAATTAGGAAGGCATTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAAGGCCAAATTGAAGATCAAGTTCATGAACCATACTGTGTTGCGAATCCTGCTCTTCCAAATTCTCCAGAAATTTCTGCTGTGAAAAGGCGACCCAGTGTTAGCTCTAGATATGATTCGTATTATACTAAATTTAGTTGCCAAGATTCACATATGGAGGGAGTTGACTTTGGCTCCTTGCATGACTCTGATGTCCAGGATAAACAACATAAGAAACCCCGCCAGGATATGAAACACAGGAAAACTTTTCACAGTCATACCAATCATTTTCTTGGCAGGAACTCTTCCCTGGATTTGTATGAAGACTCTACCGGTGAAGCTTCTGCTTACAATAGCACTAAGAATCATAGGATGGGCACTAAGCATGGTGTTGAGGGAATGAGATCTGATTCTGCTTCTAATCATAGTGATCATTATGAAGAAAACCTTGCAGTTAAGCAGAAAGACTTTCTGCCACATGGCAATGATAACATCAATCAGAAGAATGTGCAAAGGAGTGAACATGTAAAATATAAGCCTTCAAATTCAATCCGTAATCCTCGAGTTTCTGTGGATACTGAAGAAAGAGGACTATCTAATAGAATCACAAAGGAAGAGATGTTTAAGGCAGGTAGGAAGGCAAAAAAACAATACCGCAATGCAGATGGAGCAGGGATGTTTCCAAATGAAATTATGGTTGCAAAGCGAGTCAAAGCTGATACGCTTCAACAATACAATGTGAAACAATCACCTATTGCTCAGATGGAACAAAGGAAAAATCAGAGATCTGCTGCAGAGATGCCATCTAGCTTTAGCGAGGACGAAACTGCTGAAACCAGTTCCTCACTGGATTAA 1578 0.4163 MAWLESRIRIVCIIGEVVVMVGVTPRTSIWVLGKRVTLKEHKYPTEEMKSELSAELGLTEKQISGWFCHRRLKDKRLLKDESAANGRQDRSSGVIQDRGSGLGQDSCGSSKYGDHKYLDPKEVESHGLHNHDFPTADMTYGRMNHYPENVSEMDDTSSESSFLQERFSQGQEPYDTEPSRYLTPSRTLPPLNPKGAINMGYKPSGYLKVKGEIENAAITAVKKQLGRHYREDGPLLGVEFDPLPPGAFEGQIEDQVHEPYCVANPALPNSPEISAVKRRPSVSSRYDSYYTKFSCQDSHMEGVDFGSLHDSDVQDKQHKKPRQDMKHRKTFHSHTNHFLGRNSSLDLYEDSTGEASAYNSTKNHRMGTKHGVEGMRSDSASNHSDHYEENLAVKQKDFLPHGNDNINQKNVQRSEHVKYKPSNSIRNPRVSVDTEERGLSNRITKEEMFKAGRKAKKQYRNADGAGMFPNEIMVAKRVKADTLQQYNVKQSPIAQMEQRKNQRSAAEMPSSFSEDETAETSSSLD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi535g00038 525 Gene3D - 37 93 - -
Sebi535g00038 525 MobiDBLite consensus disorder prediction 82 116 - -
Sebi535g00038 525 MobiDBLite consensus disorder prediction 87 107 - -
Sebi535g00038 525 SMART HOX_1 22 81 IPR001356 GO:0003677
Sebi535g00038 525 MobiDBLite consensus disorder prediction 168 196 - -
Sebi535g00038 525 MobiDBLite consensus disorder prediction 168 186 - -
Sebi535g00038 525 ProSiteProfiles 'Homeobox' domain profile. 38 77 IPR001356 GO:0003677
Sebi535g00038 525 MobiDBLite consensus disorder prediction 306 328 - -
Sebi535g00038 525 MobiDBLite consensus disorder prediction 306 320 - -
Sebi535g00038 525 SUPERFAMILY Homeodomain-like 40 84 IPR009057 -
Sebi535g00038 525 MobiDBLite consensus disorder prediction 489 525 - -
Sebi535g00038 525 Pfam Homeodomain 40 76 IPR001356 GO:0003677
Sebi535g00038 525 CDD homeodomain 39 76 IPR001356 GO:0003677
Sebi535g00038 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 39 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi535g00038 Sebi-Chr535 525771 532293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi535g00038 26 525 Homeobox Transcription Factor Family AT4G03250 37.958 4.43e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi535g00038 Homeodomain 2.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi535g00038 - - gmx:100803515 769.229