Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi535g00037 ATGTCACGGACTGATAGAATGACTTCGGATCTTGGCAGAACTGGTGCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGGAATTGGGAACCACGCTTCTGGTGGTGGGTTTTCAGTAAGTGACACAAATAGAGGAACGGGAAAAATTCAAGAATGGGTAATGGGTCAGGAGGTGATTCTTGGATGGAAGGAGGAGAACGATGGAGACAGCTCAAGGAAAGAAGAGAAACACCTTAAACTGAGCCATGTCTCTAGAATCATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCGCGACCTGAGAAGGAATATCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAGGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCACGCAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACAAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGAAGTAATGAGAGCTTCCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAAAATGGTTTGGATAAAGCATTAGATGTGGTCTTGTATGCTGTTCCTCAAAAGGGTTTCTTCCCACCTGATTCTGCCAGTGCTTCAGTCCACTCTGTATCATCTGGAGGATCAGATAGTATGCATGGCCACATGAGGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGCGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTTATTTGGGGGGAAGGCACAGGTGATGGTGTACTGGGTGGTGGGAATCATCGAGTTGGGAGTTGTGTGGGTGTAAAAATGGATTCTTTATTTCCCAAAGCGTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCAGCCTTAGTAACCAAACAAGGTGAAATTTTCTCTTGGGGGGAGGAATCAGGAGGCAGACTTGGGCACGGTGTTGACTCTGATGTTCTTCATCCAAAGCTTATAGAGGCTCTAAGTAATACAAATATTGAACTTGTAGCATGTGGGGAGTATCATACGTGTGCTGTGACACTTTCTGGTGATCTGTATACATGGGGTAATGGCACGTACAATTATGGTCTTTTGGGTCATGGAAATCAAGTGAGCCACTGGGTTCCAAAGAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCATGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGGCAATTATTTACTTTTGGCGATGGTACATTTGGTGCTTTGGGTCATGGTGACCGAAAAAGTATTTCAGTACCAAGGGAAGTAGAGTCCCTTAAGGGTCTTCGTACTATGCGGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTCTTTACATGGGGTGATGGAGACAAAGGTCGCCTTGGGCATGGTGATAAGGAAACAAAACTTGTTCCAACCTGTGTTGCTCTTGTTGAACACAATTTTTGTCAGGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCAGGCCATGTCTATACGATGGGAAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACCCGTGTTGAAGGAAAACTGTCGAAGAGTTTTGTGGAGGAGATATCTTGTGGTGCATATCATGTTGCAGTTTTAACTTTAAGGAATGAAGTTTACACTTGGGGGAAGGGCGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAAAAACTCCCCAACATTAGTAGAAGCTCTGAAAGACAAACATGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGTTTGCCATTTAATTTCAAAAGAAAACGCCATAATTGCTATAATTGTGGACTTGTTTTTTGCCATTCGTGTAGTAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATGGTTGTTTTAATAAACTTAGGAAAACTGTAGAAACTGATTCTTCATCTCATTCTACTGTTAGCAGAAGAGGAAGTATCAATCAGGGGTCTCTTGAGTTAATTGATAAGGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGGTTTTCTTCAATGGAATCCATGAAACAAGTGGAAAGCAGATCTTCGAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGTGTCTCACCTGTTCCAAATGGGGGTTCGCAATGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGAAGGCCTAGTCCACCTCGTTCAACGACTCCAACCCCAACACTGGGAGGTCTTACATCCCCGAAGATAGTTGTAGATGATGCTAAGAGGACTAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAAGCCCAACTTCAAGAAGTCGAATTGGAAAGAACAACTAAACAGCTAAAAGATGCCATAGCAATTGCTGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAGGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCCGTAGGAGCAGCTAGGAATGTCAAATCACCTTCTCTTGCTTCTTTTGGTTCTAATCCTAGTTCCAATGAAGTTAGGTATGCTTCCCTTGATCGGTTAAATATTCAAGCAACCAGCCCAGAAGCAGACTTAACTGGATCAAATAACCAGTTACATTCAAATGGATCAAGCACTGTCAGTAATCGCAGTGCAGGTCACAATAAACAGAACCAGTCAGATTCAAATAATAGAAATGGGAGCAGAACTAAGGATAGTGAATCCCGTAATGAGACCGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACACTCACCTCCCTACCAGGAGGTGTGATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAACAAGCAGAGCAGTGGTGGGCTGAGAATCGTGCGAGAGTATATGAACAGTACAATGTACGCATGATTGACAAGTCCACTGTTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3429 0.4357 MSRTDRMTSDLGRTGAVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNGIGNHASGGGFSVSDTNRGTGKIQEWVMGQEVILGWKEENDGDSSRKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESFQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMRTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCVGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSISVPREVESLKGLRTMRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKETKLVPTCVALVEHNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTRVEGKLSKSFVEEISCGAYHVAVLTLRNEVYTWGKGANGRLGHGDTDDKNSPTLVEALKDKHVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDGCFNKLRKTVETDSSSHSTVSRRGSINQGSLELIDKDDKLDSRSRNQLARFSSMESMKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASFGSNPSSNEVRYASLDRLNIQATSPEADLTGSNNQLHSNGSSTVSNRSAGHNKQNQSDSNNRNGSRTKDSESRNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTVGVGSEDLAH 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi535g00037 1142 Gene3D - 259 426 IPR009091 -
Sebi535g00037 1142 Gene3D - 427 532 IPR009091 -
Sebi535g00037 1142 FunFam PH, RCC1 and FYVE domains-containing protein 1 274 525 - -
Sebi535g00037 1142 Gene3D - 19 173 IPR011993 -
Sebi535g00037 1142 ProSiteProfiles BRX domain profile. 1069 1124 IPR013591 -
Sebi535g00037 1142 SUPERFAMILY PH domain-like 20 164 - -
Sebi535g00037 1142 Coils Coil 901 942 - -
Sebi535g00037 1142 CDD PH_PLC_plant-like 19 165 - -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 179 209 - -
Sebi535g00037 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 303 364 IPR000408 -
Sebi535g00037 1142 SMART fyve_4 689 758 IPR000306 GO:0046872
Sebi535g00037 1142 SUPERFAMILY RCC1/BLIP-II 302 692 IPR009091 -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 169 227 - -
Sebi535g00037 1142 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 351 361 IPR000408 -
Sebi535g00037 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 587 638 IPR000408 -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 798 838 - -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 1017 1056 - -
Sebi535g00037 1142 Pfam Transcription factor BRX N-terminal domain 952 985 IPR027988 -
Sebi535g00037 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 472 523 IPR000408 -
Sebi535g00037 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 536 586 IPR000408 -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 1057 1073 - -
Sebi535g00037 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 417 471 IPR000408 -
Sebi535g00037 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 640 687 IPR000408 -
Sebi535g00037 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 365 413 IPR000408 -
Sebi535g00037 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 416 468 IPR000408 -
Sebi535g00037 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 535 583 IPR000408 -
Sebi535g00037 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 586 635 IPR000408 -
Sebi535g00037 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 472 520 IPR000408 -
Sebi535g00037 1142 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 100 972 - -
Sebi535g00037 1142 CDD FYVE_like_SF 700 753 - -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 250 269 - -
Sebi535g00037 1142 Pfam Pleckstrin homology domain 95 164 IPR001849 -
Sebi535g00037 1142 PRINTS Chromosome condensation regulator RCC1 signature 474 488 IPR000408 -
Sebi535g00037 1142 PRINTS Chromosome condensation regulator RCC1 signature 458 474 IPR000408 -
Sebi535g00037 1142 PRINTS Chromosome condensation regulator RCC1 signature 417 433 IPR000408 -
Sebi535g00037 1142 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Sebi535g00037 1142 PRINTS Chromosome condensation regulator RCC1 signature 576 594 IPR000408 -
Sebi535g00037 1142 PRINTS Chromosome condensation regulator RCC1 signature 634 655 IPR000408 -
Sebi535g00037 1142 PRINTS Chromosome condensation regulator RCC1 signature 348 361 IPR000408 -
Sebi535g00037 1142 Gene3D - 533 701 IPR009091 -
Sebi535g00037 1142 FunFam PH, RCC1 and FYVE domains-containing protein 1 526 696 - -
Sebi535g00037 1142 FunFam Putative E3 ubiquitin-protein ligase HERC1 697 765 - -
Sebi535g00037 1142 Pfam Transcription factor regulating root and shoot growth via Pin3 1068 1123 IPR013591 -
Sebi535g00037 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 639 690 IPR000408 -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 253 267 - -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 1017 1073 - -
Sebi535g00037 1142 SUPERFAMILY FYVE/PHD zinc finger 691 761 IPR011011 -
Sebi535g00037 1142 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 458 468 IPR000408 -
Sebi535g00037 1142 Pfam FYVE zinc finger 691 757 IPR000306 GO:0046872
Sebi535g00037 1142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 764 IPR013083 -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 869 898 - -
Sebi535g00037 1142 Pfam Unstructured region between BRX_N and BRX domain 993 1062 - -
Sebi535g00037 1142 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 695 757 IPR017455 -
Sebi535g00037 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Sebi535g00037 1142 Coils Coil 957 977 - -
Sebi535g00037 1142 MobiDBLite consensus disorder prediction 824 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi535g00037 Sebi-Chr535 493194 502080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi535g00037 961 1133 Major Intrinsic Protein MIP AT1G31880 33.511 5.51e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi535g00037 - - gmx:100806439 1978.37