Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi534g00015 ATGCCTCCGAGGAAGAAGCCCAACACTACCTCATCTTCTTCTTCGGCCTCTTCTAAGAAGCCCCATCCACAACCTTCCAAGTATGGAATCCAGCACTTCTTTGACCGTCACACCCTTCTCGCCTCTCAGAAGCAGCAAGCCAACAATGCAAGCCCCAACATTGTTGGAATTCCCACTTCTCATGCTGTTTACGGGTCCTCCGTTCCTCTCCCACCTCCCGGAAAACCCAACGCCGGCGAGGGTCCGTCTGAGAATTCGGTGTTACCAGTGACTAATGCCGCAGAAACTCTCTCTGAGTCTGAGGTGTCTCCGGAGATGTCCAAGTCCGTGTCGCTTAAGCGCTTCAAATTCTCACCTGGAATGTTTATCAAGCAGAGCCAGGATGATGGGGTTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTCCAAGCAGTTTCAAAACACATGCCTGAGATAATTAAAGCTTTGGCTGACTCCTCGAGGATCAATTTGTTGCCAATTCGCAACTGCTCAGAAGATAAGAATTCCCTGGATAAAGATGGAAAGGTTGAAAAGTTGCTTACTAATACTTCACCAACTCCCAATCCTTCTGCAAAAGCTCTGGTGCCAGTGAGTAAATTAGGCTTGAAAAGGATAAACCCTGACCAAAACGTGGAGTTTAATGTCAATGCAACTACTGTCAGTAATTCTGCAGTACCTGGTGGACAAAGCCCCTTCAGAACTCCACCATCATTGTCTTATTGCCAGGATAAGCTTGCCAAGGATGTTGAACACAGTGGACCATCTGACCAGCTTTTTTTAAGACAGCACAAAAAGGCATTGCTTGAACTGTTGGATCAAGTTGAAGATGCCATCGCTGTTGACAATGCTGCAGTTTGGAATAAAAGCACTTATTCCTTTAAATCTCAAGATGGAATAGCTAATCAGCTACCTGTCAGAGCTAACCGGGCAGTAGAAAGGACAAAATCACATATACCTAAGGAAACTGTTGGTGTTTTCTCCAACTCTAATTATTTGGTTTTGGAGGTATCTGAAAAACGCAGGCCTGCTGATTCATCTGCTTCTCAATGCCCATACAAGGTGCTTCGTTTACTAAATGAAAAAACTGGAGAAGAGCGGGTTGTAAACTTGTGGGATGAGTGGTATTACAGCATTATTGCACCTGGAGATACTGTGAACATAATCGGTCACTTTTATGAAGGGGGAGATTATGATATTGATCATGATCATAATTTTTTGATAGTGCACCCAGATACTCTGGTGTCTGGAACACAGGTTACTTCCAGTTTTTGTTGCCCTAGGAGGTCTGTGTTAGATGAAAGGCTAAAAAAATACAATGAGTACTCAACTGCAGCATTAACTGGAACCTTGCTTCACCAAATTTTTCAGGCTGGGCTTACAAACGAGAATCCTACAGTAAACTTATTGGAAGATTATGCAGAAGTGATAGTACAGAGAAATATTGAAAGTTTATATGCGTGTGGAGTAAATGAAAATGATGTTCACAAAACCATGATTGATGCTATCCCAAGAATATTAAATTGGATCAAGCTGTTAAAAAATACGGAGGAAGGACATGACCCTAATGTTAATTTTGGATGTGATGATGGGCTGAAGAAAGTTGGCATATCTGAGGTAATTGATATAGAAGAAATGGCATGGGCCCCAACATATGGTTTGAAAGGGATGATTGATGCTTCGGTCAGAGTAAAAGTTCAATCAAGAAAAGATGAACCAGAGGAAAAGATCATGCCGGTAGAGTTCAAAACTGGAAAAACTCCAAATAGCCAGTCATCCGTAGAACATAGTGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACTATTGATTCTGGTCTTCTGTATTATCTTCAATCAGATCAGACACAGGGCATTGTGGTTCAGAGATCTGATTTAGTTGGACTAATAATGCGACGTAATGAACTAGCAAGTGATATTCTTAAGGCATTAACCTTGCAACAACTGCCACCGATGATACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTCTGCAGCATTTATCATAAGGCACATGGTGGAAGCATAGGGAGCAGTGGATTGGGAAGTTTGTTTGATTCTTATACCAGTCACCTGACTTCTGCTCATTCTAAGTTCCTTTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAAGAGGTGTGGCGATCACATAGTTTAAAAGCTCCAAACAATGGTGGCCTTTCCTCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAGAAATCTCTCAAGGATAATCATTTCATTTATCGTTTTGTACAAGAAGATTCTTCTTGCATCTCTGAGGTTTCTGAGGGTGATCCTTCTAGCGCCTCTTTGAAAGGTGACTTAAATCGCACACTTCGAAGTGGAGACCATGTGATATTGAGCAATGAATCTAGCCATCAAACTATTGCAAAAGGGGTGATCTCAGATATTAGCCAGACCCATGTTTCTGTTTCCTTTTCAAAGCGCTTAAGGATTCCTGGGAGATCATCCGCCACACATGATCTCCTTCAACAGGTTTGGAGAATTGACAAGGATGAATTTGTGGCTTCTTTTGCAATTATGAGGTTTAATCTTATTCAACTTTTTCTACAAAATGACCAAAGCGCTCATCTCCGTAGGATGATAGTTGACCTTGAGGCTCCTAAATTTGACAGTGGATCTATAGCCAGTCAGGATCCAGCAATCTCCTATGTTTGGTCAGAGAAGAGTTTGAATAATGATCAACGTAGAGCGATTCTGAAGATACTTACGGCAAAAGATTATGCGCTTATATTAGGAATGCCTGGAACAGGAAAGACGTCCACATTGGTCCATGCTGTGAAAGCTTTATTGATTAGAGGCACATCCATTTTGCTAACAGCCTATACAAATTCTGCTGTTGATAATTTACTCATAAAATTAAAAGCACAGGGCATTGATTTTGTACGTATTGGAAGATATGAAGCAGTGAATGAAGAGGTCAGGGGGCACTGCCTCTCAGCAATGAATGTACCAAGAGTTGAAGATATCAAAATGAGGTTAGAACAAGTCAAAGTTGTCGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTACCAACATGAGATTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACTTTTGCTTCGATGTTTGTTCTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAG 3297 0.4177 MPPRKKPNTTSSSSSASSKKPHPQPSKYGIQHFFDRHTLLASQKQQANNASPNIVGIPTSHAVYGSSVPLPPPGKPNAGEGPSENSVLPVTNAAETLSESEVSPEMSKSVSLKRFKFSPGMFIKQSQDDGVDEVTWKISPVNERLQAVSKHMPEIIKALADSSRINLLPIRNCSEDKNSLDKDGKVEKLLTNTSPTPNPSAKALVPVSKLGLKRINPDQNVEFNVNATTVSNSAVPGGQSPFRTPPSLSYCQDKLAKDVEHSGPSDQLFLRQHKKALLELLDQVEDAIAVDNAAVWNKSTYSFKSQDGIANQLPVRANRAVERTKSHIPKETVGVFSNSNYLVLEVSEKRRPADSSASQCPYKVLRLLNEKTGEERVVNLWDEWYYSIIAPGDTVNIIGHFYEGGDYDIDHDHNFLIVHPDTLVSGTQVTSSFCCPRRSVLDERLKKYNEYSTAALTGTLLHQIFQAGLTNENPTVNLLEDYAEVIVQRNIESLYACGVNENDVHKTMIDAIPRILNWIKLLKNTEEGHDPNVNFGCDDGLKKVGISEVIDIEEMAWAPTYGLKGMIDASVRVKVQSRKDEPEEKIMPVEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQKTIDSGLLYYLQSDQTQGIVVQRSDLVGLIMRRNELASDILKALTLQQLPPMIQSPSICRGCRHLNVCSIYHKAHGGSIGSSGLGSLFDSYTSHLTSAHSKFLCHWDHLIDLEAKETELLKKEVWRSHSLKAPNNGGLSSIVLDASQGIPHQKSLKDNHFIYRFVQEDSSCISEVSEGDPSSASLKGDLNRTLRSGDHVILSNESSHQTIAKGVISDISQTHVSVSFSKRLRIPGRSSATHDLLQQVWRIDKDEFVASFAIMRFNLIQLFLQNDQSAHLRRMIVDLEAPKFDSGSIASQDPAISYVWSEKSLNNDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRYEAVNEEVRGHCLSAMNVPRVEDIKMRLEQVKVVAVTCLGISSPLLTNMRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQ 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi534g00015 1099 CDD DEXXQc_DNA2 932 1099 IPR026851 GO:0017116
Sebi534g00015 1099 Gene3D - 1030 1099 IPR027417 -
Sebi534g00015 1099 Gene3D - 878 1029 IPR027417 -
Sebi534g00015 1099 Gene3D - 424 690 IPR011604 -
Sebi534g00015 1099 MobiDBLite consensus disorder prediction 7 24 - -
Sebi534g00015 1099 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 875 1024 - -
Sebi534g00015 1099 CDD DNA2_N-like 425 661 - -
Sebi534g00015 1099 Pfam DNA replication factor Dna2 370 573 IPR014808 -
Sebi534g00015 1099 Pfam AAA domain 1033 1098 IPR041677 GO:0004386
Sebi534g00015 1099 Pfam AAA domain 933 1024 IPR041677 GO:0004386
Sebi534g00015 1099 MobiDBLite consensus disorder prediction 1 31 - -
Sebi534g00015 1099 PANTHER DNA2/NAM7 HELICASE FAMILY 193 1099 IPR045055 -
Sebi534g00015 1099 FunFam DNA replication helicase Dna2 536 690 - -
Sebi534g00015 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 929 1097 IPR027417 -
Sebi534g00015 1099 MobiDBLite consensus disorder prediction 65 87 - -
Sebi534g00015 1099 Pfam Domain of unknown function DUF83 582 690 IPR022765 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi534g00015 1 1074 Core DNA Replication Machinery Family AT1G08840 55.464 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi534g00015 K10742 - gmx:100799415 1429.85