Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi531g00033 ATGTCACTTGATGAGTTGATCTCCATTTCCATAACACTAACAATAGCTATTCTATTCACACTCACTTCACCAACTACCTCTCTTTACTCTTCTCCATCTCCCCCAGCCGCTCCATTCTTCGAATCTTCCCCTCAATCTCCTTCCTCTTCTCCCATCACCGTCGACGAATGGCTACACGCCACTGCCACCTACTACACCGCCGCTAACCCCAGGGACTCCGCGGGCGGCGCGTGTGGCTTCGGCGACCTCATGAGGGACGGTTACGGCTTTGCCACTGCAGGCCTCAGTGAGGCTCTCTTCGGCCGCGGCCAGATCTGTGGCGCGTGCTTCGAGCTCCGCTGCCTTGAGGAGGAAACCTCCTTCGACCGCCGCTGGTGCATCGCCGGCACCTCCATTACCGTCACCGTCACCGTCACCAATTTCTGTGCGCCTAATTACGGATTCGACGCCGATAGTGATGGCGGACATTGCAACCCTCCCAAGCAGCACTTTGTGCTCCCCATCGAAGCTTTTGAGAAGATCGCGATTTGGAAAGCTGGTAACATGCCCGTCGAGTATCGCAGGATAAAGTGCAGAAGGGATGGGGGAATCCGGTTTACGATTACTGGTTCTGGTATCTTCATTTCGGTGTTGATCAGTAATGTGGGTGGCATCGGGGATATTGTTGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTCCCATGGGTAGGAATTGGGGCCAAAATTGGCATGTAAATGCGTTACTGCAAAATCAGCCTCTTTCATTTGAGGTTACTGGTAGTGATGGGATAATGGTTACATCTTACAATGTTGCTCCCAAGAATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAATTCGACTCTTAA 873 0.5178 MSLDELISISITLTIAILFTLTSPTTSLYSSPSPPAAPFFESSPQSPSSSPITVDEWLHATATYYTAANPRDSAGGACGFGDLMRDGYGFATAGLSEALFGRGQICGACFELRCLEEETSFDRRWCIAGTSITVTVTVTNFCAPNYGFDADSDGGHCNPPKQHFVLPIEAFEKIAIWKAGNMPVEYRRIKCRRDGGIRFTITGSGIFISVLISNVGGIGDIVGVKVKGSKTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGIMVTSYNVAPKNWSFGQTFEGKQFDS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi531g00033 290 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Sebi531g00033 290 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Sebi531g00033 290 PRINTS Expansin/Lol pI family signature 179 195 IPR007118 GO:0005576
Sebi531g00033 290 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Sebi531g00033 290 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576
Sebi531g00033 290 PRINTS Expansin/Lol pI family signature 56 71 IPR007118 GO:0005576
Sebi531g00033 290 SMART dpbb_1 92 186 IPR007112 -
Sebi531g00033 290 CDD DPBB_EXPA_N 56 191 - -
Sebi531g00033 290 Pfam Lytic transglycolase 93 186 IPR009009 -
Sebi531g00033 290 SUPERFAMILY PHL pollen allergen 193 285 IPR036749 -
Sebi531g00033 290 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 206 285 IPR007117 -
Sebi531g00033 290 Gene3D - 197 288 IPR036749 -
Sebi531g00033 290 Pfam Expansin C-terminal domain 197 274 IPR007117 -
Sebi531g00033 290 SUPERFAMILY Barwin-like endoglucanases 50 214 IPR036908 -
Sebi531g00033 290 PANTHER EXPANSIN-A15 14 288 IPR002963 GO:0009664
Sebi531g00033 290 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 196 IPR007112 -
Sebi531g00033 290 Gene3D - 42 192 IPR036908 -
Sebi531g00033 290 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Sebi531g00033 290 PRINTS Expansin signature 195 207 IPR002963 GO:0009664
Sebi531g00033 290 PRINTS Expansin signature 242 263 IPR002963 GO:0009664
Sebi531g00033 290 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Sebi531g00033 290 PRINTS Expansin signature 171 184 IPR002963 GO:0009664
Sebi531g00033 290 PRINTS Expansin signature 271 287 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi531g00033 Sebi-Chr531 598013 600296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi531g00033 56 290 Expansin Gene Family AT3G03220 73.191 1.37e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi531g00033 - - tpra:123916217 400.593