Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi531g00026 ATGGCTCCCCATTTTCAGATAAAGTCCCAGAGGCAAAATGAACTTGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAATGGAGAAAGATCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGCCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGTAAAGGGGTGCAAAGTTGTGTTAGTAGTCCAGCTGGAATATTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGATAACTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCTGCTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTGTCATATACATCTGATAACATTTATTCATCCGCATCTTTCCTCTCCAGCACTCATGGCATAACAGATTCCGTCCCAAGTTCTCCATATATTGATTCAGATATTCATCGAAAGATTGAATCAACACGTGTTGACAAGGAACACAAGAATTTGTCCTACAGGTCTCTGATGCCTCCTACCTCCCCACATGTAGGAAATAACAATGTATTAAAAGATGTAATGATATGGGGTGGAGGAATTGGATGTCTTGTAGGGATTGTAAATGAAAGGTTTGTCCAAAATGGAGTTTATTCTTTAGTGCCAAAGTTACTGGAATCCACTGCAATGTTAGATGTACAAAATATAGCCTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGACAAGGGAAATGGGGAAGGCTTGGGCAAAAAATTGATATGGACATTAGCTCTCCCAAAGTAGTTGATTCTCTTAGTGGAATTCATGTAAAGCATGTTGCTTGTGGTGAGTATCATACAAGTGCTTTGACAGATTCTGGTGAAGTATATACATGGGGGAATGATGTTTGTTGTTCAGATTTAGTTGATGAAGGTAGAATTAGAAGTCAGTGGATACCACATAAACTTTCTGGACCTTTAGATGGTATTAGTATTTCAAGTGTTGCTTGTGGTGAATGGCACACTGCACTTGTCTCTAGCTGTGGACGGTTATTCACATATGGAGATGGTACATTTGGAGTACTAGGCCATGGGGATCTTCGGAGCTCTTCTAGACCAAAAGAAGTTGAATCTCTTAGTGGTCTAATGGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCTGCTATTGTTGAAGTCATGTTTGATCGTTTTAGGTACAATACTCCTACTGGTAAGCTCTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAAGCTTGTACCAACATGTGTTGCACAACTTGTTGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAACATGGGGAAGGTTTTTGCAATGGGAAGTGCTAAATTTGGGCAACTTGGAAATCCACATGCAAGAGATAAAGCAGTTATGGTTGAAGGACAACTTAAGCAAGAGTTTGTTAAAGTGATATCATCTGGTTCATATCATGTTGCTGTTTTGACATCTGCAGGGAGTGTGTATACATGGGGCAAAGGTGAAAATGGGCAATTGGGGCTAGGTGATACTGAAGACAGACACATACCTTGTTTTGTTGAGGCTCTAAGAGACAGGCAGGTAGACACTATCACTTGTGGTCCAAGTTTCACAGCTGCAATATGTTTGCACAGACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTACCTTTTGGGTTCACAAGGAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTATAAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTTTGAAAGACAGCAAGGAAGTACACATTCAGCTATGTCATCAAAGTCTAGAAATTACAATACTCAGCAGATATTGAAGCATCAAAACAAGATTGGTGATCTCACTGAAGATAGGGGAGAAACAACTGTGACACAAGGTCCTCTATTGTCTCTCAGTCAATCTTGTTACAGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCATGAATTAGAAGATGGTTCTTATAGGTTAGGTGGAGTGCCACAATGTGGGAAAGTTCCATGCCCTGTCCTATTTAAAAACAATAGTACAGAAAATTCAGCTGTGCAAGTTTCTTCATCCAAAAATAAATTAGCTTCTGTTTCACCACTGAATGTAGAATCTACAGAATACAACTTCCCCAATGCAGAGACAGATACAATAAAGTCTGAGAAGATGCTCAAAGAAGAAGTTCAGAAGCTGAGAGCTGAGGCTAAGAGACTTGAAGAGCAGTGTGAACTCAAGAACAACAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGAGTGTAGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCTAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAGTAACAGGAAAAGATAATGCTGGACAAGAAGGAAAGGTTGGGCTACCTGAATTTCTTCCTAATTTGGCACCCATACATACAACAGATATGAATAGTCCAAGAGATGGAAACATGGACAGTCTATCCAATTCCCCTATAGTATTCTCTGACACTTTCAAATCCAAATTTGGGAAAAGTATGTTCCTAAAAAATGATAGATTGATGGAGAATTCTAACTTCACTAGAGCAGAACCTCAACAAGACACTGCAGATAGCTTAAAGGCGGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCATGTGGTAAAAGGGGCCTTAAGAGAGTGAGATTTAGCCGGAAGCGGTTCTCACAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGGTACAGTGTACCATAAGTATGAGATTGAAGGATATATGAACACTAGCCAAGGTCAGGTGAAAGGCTAA 3006 0.4055 MAPHFQIKSQRQNELEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDNSQFTQVHSVCASPALSLSERCFSDGLSYTSDNIYSSASFLSSTHGITDSVPSSPYIDSDIHRKIESTRVDKEHKNLSYRSLMPPTSPHVGNNNVLKDVMIWGGGIGCLVGIVNERFVQNGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKVVDSLSGIHVKHVACGEYHTSALTDSGEVYTWGNDVCCSDLVDEGRIRSQWIPHKLSGPLDGISISSVACGEWHTALVSSCGRLFTYGDGTFGVLGHGDLRSSSRPKEVESLSGLMVRSVACGSWHTAAIVEVMFDRFRYNTPTGKLFTWGDGDEGRLGHADNGSKLVPTCVAQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKFGQLGNPHARDKAVMVEGQLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRHIPCFVEALRDRQVDTITCGPSFTAAICLHRPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKVINASLAPSKSKAFRVCDQCFERQQGSTHSAMSSKSRNYNTQQILKHQNKIGDLTEDRGETTVTQGPLLSLSQSCYRKSMPSGRKDWKNQQESQHELEDGSYRLGGVPQCGKVPCPVLFKNNSTENSAVQVSSSKNKLASVSPLNVESTEYNFPNAETDTIKSEKMLKEEVQKLRAEAKRLEEQCELKNNKIQECQQKIEESWSVAREEAAKCKAAKEVIKALALRLHTVTGKDNAGQEGKVGLPEFLPNLAPIHTTDMNSPRDGNMDSLSNSPIVFSDTFKSKFGKSMFLKNDRLMENSNFTRAEPQQDTADSLKAEWVEQYEPGVYITFTTLPCGKRGLKRVRFSRKRFSQKEAERWWEENQGTVYHKYEIEGYMNTSQGQVKG 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi531g00026 1001 ProSiteProfiles BRX domain profile. 932 987 IPR013591 -
Sebi531g00026 1001 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 342 352 IPR000408 -
Sebi531g00026 1001 PRINTS Chromosome condensation regulator RCC1 signature 358 372 IPR000408 -
Sebi531g00026 1001 PRINTS Chromosome condensation regulator RCC1 signature 342 358 IPR000408 -
Sebi531g00026 1001 PRINTS Chromosome condensation regulator RCC1 signature 251 267 IPR000408 -
Sebi531g00026 1001 PRINTS Chromosome condensation regulator RCC1 signature 460 478 IPR000408 -
Sebi531g00026 1001 PRINTS Chromosome condensation regulator RCC1 signature 232 245 IPR000408 -
Sebi531g00026 1001 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Sebi531g00026 1001 PRINTS Chromosome condensation regulator RCC1 signature 517 538 IPR000408 -
Sebi531g00026 1001 Pfam FYVE zinc finger 580 638 IPR000306 GO:0046872
Sebi531g00026 1001 SUPERFAMILY RCC1/BLIP-II 191 574 IPR009091 -
Sebi531g00026 1001 Gene3D - 183 313 IPR009091 -
Sebi531g00026 1001 Gene3D - 314 408 IPR009091 -
Sebi531g00026 1001 Gene3D - 415 579 IPR009091 -
Sebi531g00026 1001 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 471 521 IPR000408 -
Sebi531g00026 1001 CDD FYVE_like_SF 583 636 - -
Sebi531g00026 1001 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 301 355 IPR000408 -
Sebi531g00026 1001 SUPERFAMILY FYVE/PHD zinc finger 577 655 IPR011011 -
Sebi531g00026 1001 ProSiteProfiles PH domain profile. 1 55 IPR001849 -
Sebi531g00026 1001 Gene3D - 2 61 IPR011993 -
Sebi531g00026 1001 Coils Coil 779 813 - -
Sebi531g00026 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 651 IPR013083 -
Sebi531g00026 1001 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 407 IPR000408 -
Sebi531g00026 1001 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 419 470 IPR000408 -
Sebi531g00026 1001 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 522 573 IPR000408 -
Sebi531g00026 1001 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 300 IPR000408 -
Sebi531g00026 1001 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 578 640 IPR017455 -
Sebi531g00026 1001 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 843 - -
Sebi531g00026 1001 Pfam Transcription factor regulating root and shoot growth via Pin3 931 986 IPR013591 -
Sebi531g00026 1001 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 394 404 IPR000408 -
Sebi531g00026 1001 Pfam Regulator of chromosome condensation (RCC1) repeat 249 297 IPR000408 -
Sebi531g00026 1001 Pfam Regulator of chromosome condensation (RCC1) repeat 419 467 IPR000408 -
Sebi531g00026 1001 Pfam Regulator of chromosome condensation (RCC1) repeat 300 351 IPR000408 -
Sebi531g00026 1001 Pfam Regulator of chromosome condensation (RCC1) repeat 356 404 IPR000408 -
Sebi531g00026 1001 Pfam Regulator of chromosome condensation (RCC1) repeat 522 570 IPR000408 -
Sebi531g00026 1001 SMART fyve_4 572 641 IPR000306 GO:0046872
Sebi531g00026 1001 SUPERFAMILY PH domain-like 13 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi531g00026 Sebi-Chr531 494016 499648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi531g00026 928 991 Major Intrinsic Protein MIP AT1G31880 45.312 7.85e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi531g00026 - - gmx:100797223 1717.21