Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi531g00025 ATGGCACCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCTACAGATGAAGAACTTGTTTCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAGATTGAGTTGGAGATTATCCCTGAAGTTGATCTCTACAAATGTGAACCATGGGACTTGCCAG 157 0.414 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLP 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi531g00025 52 Pfam No apical meristem (NAM) protein 7 52 IPR003441 GO:0003677|GO:0006355
Sebi531g00025 52 Gene3D NAC domain 15 52 IPR036093 GO:0003677|GO:0006355
Sebi531g00025 52 ProSiteProfiles NAC domain profile. 6 52 IPR003441 GO:0003677|GO:0006355
Sebi531g00025 52 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 52 - -
Sebi531g00025 52 SUPERFAMILY NAC domain 4 52 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi531g00025 Sebi-Chr531 457700 457856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi531g00025 1 52 NAC Transcription Factor Family AT1G65910 92.308 3.64e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi531g00025 NAM 3.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi531g00025 - - gmx:100808596 114.39