Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi531g00016 ATGGAAATAATGGGTTTCTTTTACCCATTTAAATTAGGGGAAAATTTCGGGTCCTTCTGCTCCGCTCATTCAGCGAGAAAAAGGGGTAGCTTCAACCCATCTGCAAGGTGTCAATCTTTAGGATGGAGTAGGAGAAGATTGATTGATATCTTGACGCGTGGTACAGCGGATTTCTTCCTCGAACCGGTGATGTGGATTATAAATTATGTGAGAAATATCACTTGTGGAAGGGATACTTGGAGACTAAAAGTTCGGGTTGTTAGGTTATGGGAAGTATGTGCACGTGACAATCCTGCCAATATTTTCTCTGTTGAGATGGTGTTGGTTGATTCTGAGGGTGGAAGAATTCAAGCAAGCATTCGAAAAGCCATGCTGAGGAGATTTATGGACTCTGTTGCTGAAGGTGGTGTGTATAGGATGACTTACTTTGGATTTATGGATAATGGTGGTTCTTACAGGGCCACATCCCATGAGTTCAAGCTTTTGTTTCAAGCAAGAACAAGAGTTCTCCCTGCTGAAAGTATCAGTATTCCAAGATTTGGATTAGATTTGAAGGATACTGAATATGTCAAAAATACTAAGGGTGAATGTGACTATTTGATTGATATTATTGGATTAGTGACAACTATTCGTGAAAAGAAGCAGTATGATCGAAATGGGAGGATCATTAGAGTTATGGATGTGGAGCTCACTGATGACAAGGGATCTGTCAAATGTTCACTTTTTGGACATCTTTTTGATCTTATGAATGGTGACGTGTCTATTCAAACAATGAGTAACTCAAGTAGGCTATTGTGGAATCCACAAATTCCAGAGGCTATTTCATTTAAGAATGGTATTGTGGAACATGGTTTTGATACCAATCTTCCACTTGGAGTTATTGGTGACAATGATCGTTCCTACACTGTTAGAGAGGAGTTTATATCTGTTTTTCCCAGGAAGACAATTGAAGATCTTCAATTAACTGAAGAGGATGGAATCTTTATATGTTTCGGGAAAGTTGACAGTATTGTGAAAGATGGTGCATGGTGGTATCTTTCTTGCACTTGTCTCAAAGCTGTGAATTTGGGTGAAGATGGTGAGGGATATTTTTGTCCTAAGTGTGAGGCCAATGTTACTGATGTCATCCCTAGATTTAGGTTGAGGTTAGAGGTCAATGATGGACATGAAAAAGCCCATTTTGTCATTTTCGATTCTGATTGTGAGACTTTGTTCTCTAAGAAGTGTGGTGACATGATTGTTGAGGTTAAGGATCCAAATTGTTTTGAGTATCCTCAAGAGCTGTATGCTATTATAGTTGATGTTAATTATGTTGCTTTGGATGATGTTGTTAATCACCCTGGATTGTCTCCCATATCCTTGGCTGAGTCCTCCAATCCCTCTGCCTGTTTGGCCCCTGAGAAGAGGAAGGATGCTGCCCGAGTTGATGTCCCTCCAGTTTGCAAGAAGAGGGGAAAAGGAAGAGCTTTGAAGATTGAGCAGTAG 1485 0.4013 MEIMGFFYPFKLGENFGSFCSAHSARKRGSFNPSARCQSLGWSRRRLIDILTRGTADFFLEPVMWIINYVRNITCGRDTWRLKVRVVRLWEVCARDNPANIFSVEMVLVDSEGGRIQASIRKAMLRRFMDSVAEGGVYRMTYFGFMDNGGSYRATSHEFKLLFQARTRVLPAESISIPRFGLDLKDTEYVKNTKGECDYLIDIIGLVTTIREKKQYDRNGRIIRVMDVELTDDKGSVKCSLFGHLFDLMNGDVSIQTMSNSSRLLWNPQIPEAISFKNGIVEHGFDTNLPLGVIGDNDRSYTVREEFISVFPRKTIEDLQLTEEDGIFICFGKVDSIVKDGAWWYLSCTCLKAVNLGEDGEGYFCPKCEANVTDVIPRFRLRLEVNDGHEKAHFVIFDSDCETLFSKKCGDMIVEVKDPNCFEYPQELYAIIVDVNYVALDDVVNHPGLSPISLAESSNPSACLAPEKRKDAARVDVPPVCKKRGKGRALKIEQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi531g00016 494 PANTHER OS03G0429900 PROTEIN 70 432 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi531g00016 494 SUPERFAMILY Nucleic acid-binding proteins 311 428 IPR012340 -
Sebi531g00016 494 CDD RPA1_DBD_C 314 437 IPR047192 -
Sebi531g00016 494 CDD RPA1_DBD_A_like 81 169 - -
Sebi531g00016 494 Pfam Replication factor-A C terminal domain 330 412 IPR013955 -
Sebi531g00016 494 Gene3D - 67 171 IPR012340 -
Sebi531g00016 494 Gene3D - 305 436 IPR012340 -
Sebi531g00016 494 SUPERFAMILY Nucleic acid-binding proteins 69 176 IPR012340 -
Sebi531g00016 494 Pfam Domain of unknown function DUF223 105 175 IPR003871 -
Sebi531g00016 494 SUPERFAMILY Nucleic acid-binding proteins 194 279 IPR012340 -
Sebi531g00016 494 Gene3D - 183 284 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi531g00016 Sebi-Chr531 340595 344338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi531g00016 79 412 Core DNA Replication Machinery Family AT5G08020 23.577 4.26e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi531g00016 - - lja:Lj6g3v0884310.1 320.857