Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi531g00012 ATGCCACCACTTTCCATCTTCATCTTCCTCAACGCTGCTACCACCTTCTTCTTCTTCTTCGCCGCCGCAGCAACACAATTCGACTTTGACACCTTAACCTTAAGCACCCTCAAGCTCCTCGGCGATGCCCACCTCAACAACAACACCGTCAGCCTCACCGGCGATCCTGCCGTCCCCAATTCCGCCGCCGGCAGAGCCCTTTACTCCACTCCCATCAGATTCCGGCAATCGGGTAACCCCCTTTTGGCCAGCTTCACCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCCTCCTCCGTCGGCGGCGGACTCGCCTTCCTCATCTCGCCGGACGCCGACGCCGTCGGCAACCCCGGCGGCTTCCTTGGCCTCGGTGGCTCCTCTTCCTTCCTCGCCGTCGAATTCGACACCCTCATGGACGTGGAATTCAACGACATTAACGGCAACCACGTCGGCGTCGACCTCAACACCGTCGTTTCAAGCCAAGTTGGTGACTTGGGAACCATCGGAATCGATCTCAAGAGCGGTGACTCAGTGAACGCGTGGATCGAATACGATGGAACCACCAAAGGGCTTAACATTTGGGTTTCCTACTCGAATGTGAAACCCAAAGATCCAATTTTGAAGGGTAGCACAGAGGTTCACAATGTGGAGTGGTGGAGTTTCACCTCCAATTTTGATTCCACGCCACCACCTTCAGTGAACTTAACGGCACCTTCATTGGCTCCTTCTGCTCAACAAAAAGAGAGTAAATCTTCTTGCCACAGTGGTTTGTGTAAGCAAGGTATGGGAGCAGTTGCTGGGGTTGTCACTGCTAGTGCTTTTGTTCTTGCTCTGTTTGCTGGTGCATTGATTTGGGTGTATTCCAAGAAGGTGAAGCGTGTGAAGAGGTTTGAATCGCTTGAGTCAGAGATCATCAGAATGCCTAAGGAGTTTACCTATAAGGACCTCAAATTGGCCACAAGGTGCTTCAGTGCTAATAGGGTCATTGGTCATGGTGCGTTTGGGACTGTCTATAAGGGGGTATTGCCTGAGAGTGGTGACATTGTTGCTGTGAAGAGGTGTAACCATAATGGTCAAGGTAAGAATGAGTTTTTGTCTGAGTTGTCTATAATTGGGAGCCTTAGGCATAGAAACCTTGTTCGCCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTATTGGTGTATGACTTGATGCCAAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGAATACCTTTACCATGGCCTCATAGGCTTAAAATTTTGTTAGGTGTGTCATCTGTTTTGGCCTATTTGCATCATGAGTGTGAAAATCAGGTGATTCATAGAGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCCAGGTTAGGTGATTTTGGTTTAGCTAAGCAAACGGAGCATGACAAGTCCCCTGATGCCACAGTGGCTGCTGGAACAATGGGGTACCTGGCTCCTGAGTATGTGCTTACAGGTAGAGCCACTGAGAAAACTGATGTGTTCAGTTATGGTGCTGTGGTTCTTGAAGTGGCTAGTGGGAGAAGACCTATAGAGAAAGATGCTACTGGGGCTGGTAAAGGTGGGGTTAGAAGCAATTTGGTAGAATGGGTTTGGAATTTGCACCAGGAAGGGAAGTTACTAATGGCAGCTGATCCAAGGCTTGAGGGTGAGTTTGATGAAGGGGAGATGAGGAGGGTGCTATTGGTTGGCTTAGCTTGTTCACACCCTGATTCAATGGCAAGACCAACTATGAGGGGTGTGGTTCAGATGCTGCTAGGTGAAGCTGAAGTGCCAATTGTCCCTAGAACCAAGCTATCTACTAGTTATAGTACTTCCCAACTCTTGATGACATTGCAAGATAGTGAATCTGACTCCAATGCTATAATCACCATCTCTACCTCCTCATCAGAGAACAGTTTCAATGATAGAGATATAGTCTGA 1962 0.4837 MPPLSIFIFLNAATTFFFFFAAAATQFDFDTLTLSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYSTPIRFRQSGNPLLASFTTFFSFSVTNLNPSSVGGGLAFLISPDADAVGNPGGFLGLGGSSSFLAVEFDTLMDVEFNDINGNHVGVDLNTVVSSQVGDLGTIGIDLKSGDSVNAWIEYDGTTKGLNIWVSYSNVKPKDPILKGSTEVHNVEWWSFTSNFDSTPPPSVNLTAPSLAPSAQQKESKSSCHSGLCKQGMGAVAGVVTASAFVLALFAGALIWVYSKKVKRVKRFESLESEIIRMPKEFTYKDLKLATRCFSANRVIGHGAFGTVYKGVLPESGDIVAVKRCNHNGQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALYEARIPLPWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLAKQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDATGAGKGGVRSNLVEWVWNLHQEGKLLMAADPRLEGEFDEGEMRRVLLVGLACSHPDSMARPTMRGVVQMLLGEAEVPIVPRTKLSTSYSTSQLLMTLQDSESDSNAIITISTSSSENSFNDRDIV 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi531g00012 653 PANTHER - 48 608 - -
Sebi531g00012 653 SMART serkin_6 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi531g00012 653 ProSitePatterns Legume lectins beta-chain signature. 132 138 IPR019825 -
Sebi531g00012 653 Pfam Protein kinase domain 327 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi531g00012 653 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 231 IPR013320 -
Sebi531g00012 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Sebi531g00012 653 Pfam Legume lectin domain 25 213 IPR001220 GO:0030246
Sebi531g00012 653 Gene3D - 23 233 - -
Sebi531g00012 653 ProSiteProfiles Protein kinase domain profile. 325 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi531g00012 653 FunFam L-type lectin-domain containing receptor kinase VIII.1 401 616 - -
Sebi531g00012 653 SUPERFAMILY Protein kinase-like (PK-like) 307 636 IPR011009 -
Sebi531g00012 653 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Sebi531g00012 653 FunFam L-type lectin-domain containing receptor kinase VIII.1 289 400 - -
Sebi531g00012 653 Gene3D Transferase(Phosphotransferase) domain 1 401 605 - -
Sebi531g00012 653 CDD STKc_IRAK 331 598 - -
Sebi531g00012 653 Gene3D Phosphorylase Kinase; domain 1 287 400 - -
Sebi531g00012 653 CDD lectin_legume_LecRK_Arcelin_ConA 41 227 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi531g00012 Sebi-Chr531 284876 286904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi531g00012 4 635 Receptor kinase-like Gene Family AT3G53380 63.808 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi531g00012 Pkinase 8.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi531g00012 - - gmx:100815895 1004.97