Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi530g00025 ATGAGAAAGTGCAAGAGGAACAGAATCAAAGTGTGTGTAACGTTTTCTCTTTTCTTTTCTCTGTTCTTGCTCACTGCTCATCTCGCCGGAGCTGCCGATTACGAGCCCGCCGACAAGATTTTCCTCAACTGCGGTGCTCCGTCTGACGCCACCGACGACGACGGCCGGAAATGGACAACCGACATCGGATCCAAGTTCACTTCCTCCGCCGCCGGAGACAGCTCCACCACTTCGCCGGCGGCCACTCAGGACCCTGCCGTTCCTCAAGTCCCTTACATGAACGCCCGCATTTTCCGTTCACCTTTCACCTACACTTTTCCGGTGGCTCCCGGTCGGAAATTCCTCCGGCTGCACTTCTACCCTGCTTCCTACGCGGGACTCAACGCTTCCGACGCTCGATTCTCCGTCACCGCCGAGTCCTACACTCTGCTCAGGAACTTCAGCGCCTGGGAAACCACGTTAGGGTTGAATTACGGTTACATTGTGAAGGAATATTCCATTAACGTTGATGGCGAAAAACTCACTGTCATTTTCACCCCTGCCACGAAGGCCTATGCGTTTGTGAATGGGATTGAGGTTGTGTCCATGCCTGACATTTACTCCTCCTCCGGTGACGGAAGCACTGACACCATGGTCGTCGGCACAAACACACCTTTCATCATTGACAACAGCACAGCACTTGAAAATATCTATCGCTTGAACGTTGGAGGAAATGTTATCTCGCCTTCACATGACACTGGCCTCTTCAGGTCATGGGCTGATGATGTGCCCTTTCTGTTTGGTGCTGCCGTTGGAACAACGGAGCTTGCTGACCCGGAAGTGAAGATTGAGTACCCGCCAGGGACACCTTCCATTGCTCCAGTTGATGTCTATGCCACTGCCAGGTCATCGGGTCCCAATGCCAGTGTCAACATTAATTACAACATGACTTGGGTTTTTTCTATTGCTTCAGGCTTTTCTTATCTTGTTAGACTCCATTTTTGTGAAGGCTCTACTGCCATCTTCAAGGTTAATCAGAGGGTGTTTGATATATTCCTCCATAATCAAACTGCTCAGGAGGGTGCTGATGTTATTGCCTGGGCAAAGGAGTTTGGGCTTTCACATTCAAATGGGGTTCCTGTGCATAAGGATTATGTTGTGTTTGTTCCCAATGGGGAACCCTGGCAGGACCTATGGCTTTCACTTCATCCTTATACAAGTTCAAAACCTCAATATTATGACACAATCTTGAATGGAGTGGAGATATTCAAAATCAATGACACTAAAGGTAGTCTGGCTGGGCCAAACCCCCCTCCTCTTCCAACTAACCCTTCAATGGATAGAGCATCTAGTCATGGAAAGTCATCATCAAAGAATAGGACAAGAACAATTGCTGTTGCTGGTGGTGTGATAGGAGGAGTTGCTTTAGTACTTTTGCTTGGGATGTTTGCTTTTGCTGCCCGGAGGCGCCACAGGCATGGACAAGAGTCTAGTGCGAATGAAGGGCCATCTGGTTGGCTCCCTCTTTCTCTGTATAGTAATTCACACTCTGCAGGTTCTGCCAAGACCAACACCACGGGGAGTCATGCATCCTCTCTGCCATCAAACCTTTGTCGCCATTTCTCCTTTGCCGAGATCAAGGCAGCCACAAACAACTTTGATGAAGCCTTGCTCCTTGGGGTGGGAGGATTTGGTAAGGTTTACAAAGGAGAAATAGATGGTGGAACAACCAAAGTAGCAATCAAGCGTGGGAACCCACTTTCTGAGCAAGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCATCGCCACCTTGTTTCATTGATTGGATACTGTGAAGAGAACACTGAGATGATTCTTGTCTATGACTATATGGCTTATGGTACAGTCAGGGAGCATCTGTACAAGACTCAAAAGCCTCCCCTGCCATGGAAGCAGAGGCTGGAGATATGCATTGGAGCTGCTAGGGGGTTACACTACTTGCACACTGGTGCTAAGCACACTATCATCCACCGTGATGTGAAGACAACAAACATTTTGCTAGATGACAAGTGGGTGGCAAAGGTGTCTGATTTTGGATTGTCAAAAACTGGCCCAACATTAGACAACACTCACGTAAGCACTGTGGTGAAGGGAAGTTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTCACTGAAAAATCTGATGTTTACTCCTTTGGTGTGGTTCTGTTTGAGACATTGTGTGCTCGACCTGCTTTGAACCCAACCCTTGCAAAGGAGCAAGTGAGCTTAGCTGAGTGGGCACCCTATTGCTACAAGAAAGGCATTCTTAATCAAATCATTGATCCTTATCTCAAGGGCAAGATAGCACCTGAGTGCTTTAACAAGTTTGTTGAGACTGCCATCAAGTGTGTGGCAGACCAAGGCATTGAGAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCCTTGCAGCTTCAAGAGAGTGCAGAGGAGAGTGGCAAGGGCATGCACAATGAAGAGGAAACCCTGTACACAGATTCTAAAGGGAAGAAAGACAATGATGCATCACCAGGTTTTGATGGCAATGTGACTGACTCCAGGAGCAGTGGCATGAGTATGAGCATTGGTGGTAGAAGTTTAGCAAGTGATGACTCTGATGGACTAACACCTAGTACTGTGTTTTCCCAGATCGTCAATCCAAAGGGGCGTTGA 2706 0.4804 MRKCKRNRIKVCVTFSLFFSLFLLTAHLAGAADYEPADKIFLNCGAPSDATDDDGRKWTTDIGSKFTSSAAGDSSTTSPAATQDPAVPQVPYMNARIFRSPFTYTFPVAPGRKFLRLHFYPASYAGLNASDARFSVTAESYTLLRNFSAWETTLGLNYGYIVKEYSINVDGEKLTVIFTPATKAYAFVNGIEVVSMPDIYSSSGDGSTDTMVVGTNTPFIIDNSTALENIYRLNVGGNVISPSHDTGLFRSWADDVPFLFGAAVGTTELADPEVKIEYPPGTPSIAPVDVYATARSSGPNASVNINYNMTWVFSIASGFSYLVRLHFCEGSTAIFKVNQRVFDIFLHNQTAQEGADVIAWAKEFGLSHSNGVPVHKDYVVFVPNGEPWQDLWLSLHPYTSSKPQYYDTILNGVEIFKINDTKGSLAGPNPPPLPTNPSMDRASSHGKSSSKNRTRTIAVAGGVIGGVALVLLLGMFAFAARRRHRHGQESSANEGPSGWLPLSLYSNSHSAGSAKTNTTGSHASSLPSNLCRHFSFAEIKAATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTVREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFETLCARPALNPTLAKEQVSLAEWAPYCYKKGILNQIIDPYLKGKIAPECFNKFVETAIKCVADQGIERPSMGDVLWNLEFALQLQESAEESGKGMHNEEETLYTDSKGKKDNDASPGFDGNVTDSRSSGMSMSIGGRSLASDDSDGLTPSTVFSQIVNPKGR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi530g00025 901 FunFam FERONIA receptor-like kinase 225 419 - -
Sebi530g00025 901 CDD TM_EGFR-like 455 486 - -
Sebi530g00025 901 PANTHER OS03G0124300 PROTEIN-RELATED 14 488 IPR046957 GO:0004672
Sebi530g00025 901 MobiDBLite consensus disorder prediction 857 901 - -
Sebi530g00025 901 FunFam Receptor-like protein kinase FERONIA 518 622 - -
Sebi530g00025 901 Gene3D Transferase(Phosphotransferase) domain 1 623 845 - -
Sebi530g00025 901 SMART serkin_6 546 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi530g00025 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 667 679 IPR008271 GO:0004672|GO:0006468
Sebi530g00025 901 CDD STKc_IRAK 552 818 - -
Sebi530g00025 901 Pfam Malectin-like domain 42 418 IPR024788 -
Sebi530g00025 901 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Sebi530g00025 901 ProSiteProfiles Protein kinase domain profile. 546 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi530g00025 901 FunFam Receptor-like protein kinase FERONIA 623 833 - -
Sebi530g00025 901 Gene3D - 39 196 - -
Sebi530g00025 901 Gene3D - 226 419 - -
Sebi530g00025 901 SUPERFAMILY Protein kinase-like (PK-like) 521 819 IPR011009 -
Sebi530g00025 901 MobiDBLite consensus disorder prediction 67 86 - -
Sebi530g00025 901 MobiDBLite consensus disorder prediction 828 901 - -
Sebi530g00025 901 MobiDBLite consensus disorder prediction 438 452 - -
Sebi530g00025 901 FunFam FERONIA receptor-like kinase 39 197 - -
Sebi530g00025 901 MobiDBLite consensus disorder prediction 67 84 - -
Sebi530g00025 901 MobiDBLite consensus disorder prediction 830 853 - -
Sebi530g00025 901 ProSitePatterns Protein kinases ATP-binding region signature. 552 575 IPR017441 GO:0005524
Sebi530g00025 901 MobiDBLite consensus disorder prediction 424 452 - -
Sebi530g00025 901 Pfam Protein tyrosine and serine/threonine kinase 552 814 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi530g00025 Sebi-Chr530 388825 391893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi530g00025 26 901 Receptor kinase-like Gene Family AT3G51550 71.412 0.0 1257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi530g00025 Malectin_like 2.3e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi530g00025 - - gmx:100499644 1354.35