Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi530g00021 ATGGAGAAGACAGGAGTGGTAGTATTATCGGCGAAGGAAGCATTCGAGAAGCTTGAGAAGGTTGGAGAAGGGACATATGGGAAAGTGTACAGAGCAAGAGAGAAGGCCACTGGGAAGATCGTTGCTCTCAAGAAGACTCGCCTCCATGAGGACGAAGAAGGTGTCCCTCCCACCACTCTTCGTGAAGTTTCCATTCTCCGAATGCTCTCCCGCGATCCCCATGTCGTCAAGTTAATGGATGTGAAACAGGGTCAGAACAAGGAAGGGAAGACCGTCCTCTACTTGGTCTTCGAGTACATGGATACCGATCTCAAGAAATACATTCGTACTTTCCGCCAAACCGGAGAAAACATCCCACCCAAAACCATCAAAAGCTTGATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATAGCTGACCTTGGACTTGCTCGAGCGTTTACTGTGCCAATTAAGAAGTACACGCATGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTTCTTTTGGGTGCTACCCATTACTCAATGGCAGTGGATATGTGGTCCGTTGCCTGCATATTTGCCGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACAACTCCTTCATATATTCAGGCTGTTGGGCACTCCTAACGAAGAGGTGTGGCCAGGTGTTAGTAAACTGATGAACTGGCATGAGTACCCCCAGTGGAGCCCTCAGAGTATTTCAACTGCTGTTCCAACTTTGGATGTGCTTGGACTTGATCTATTATCTCAAATGTTGCAATATGAACCTTCCAAGCGAATTTCTGCAAAGAAAGCTATGGAACACCCTTACTTCGATGATCTGGACAAGACCTATCTTTAG 942 0.4682 MEKTGVVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVKLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRTFRQTGENIPPKTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWSPQSISTAVPTLDVLGLDLLSQMLQYEPSKRISAKKAMEHPYFDDLDKTYL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi530g00021 313 SMART serkin_6 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi530g00021 313 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Sebi530g00021 313 FunFam Cyclin-dependent kinase 2 103 312 - -
Sebi530g00021 313 ProSiteProfiles Protein kinase domain profile. 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi530g00021 313 Gene3D Phosphorylase Kinase; domain 1 10 101 - -
Sebi530g00021 313 FunFam Cyclin-dependent kinase B2,2 11 101 - -
Sebi530g00021 313 SUPERFAMILY Protein kinase-like (PK-like) 11 309 IPR011009 -
Sebi530g00021 313 Gene3D Transferase(Phosphotransferase) domain 1 102 312 - -
Sebi530g00021 313 Pfam Protein kinase domain 15 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi530g00021 313 PANTHER CELL DIVISION PROTEIN KINASE 13 306 - -
Sebi530g00021 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi530g00021 Sebi-Chr530 290405 291990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi530g00021 1 313 Core Cell Cycle Gene Families AT1G20930 84.762 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Sebi530g00021 Pkinase 1.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi530g00021 K07760 - gmx:100808302 596.66