Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi530g00020 ATGGCTTCTCTGCTTCCTCCAACTGCAACTGCAACCACTACAATTCAACATAATCAAATGACAATCTGCTTCTCTCCCCTGAAACCCTTCACCCCAAATAATGTTTCTTTCTTAACAAACCGTTTCAAGAGCAACCCTGCAAAGTGTAATGCATTGTTTGATAGTGTGGCCAAGGGTTTGTTGGAGAACACTGTTAGTCTGGACCAGTTTCCTAGTCTTCAATCAGGATTAGTGCAATTTCAGAGAGTAACTGAAGACTTGTCAGACATTCAGAGGTGGGGGTTCCTCATTTTTGGTGGGCTCATATGGATTTACTTAACTGCAAGGCCAGGTGTTCTTATTGGTGCCATTGATGCATACCTTCTGGCTCCTATTCAACTGGGTTTGGACAATCTATCTGGAAGGAGAAACTTGAAGAGGAGTGATTTTCTGGTTGGAGATAAGCTTGGTGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGCTTCAAAGAATGTGGATGTAGAAGAGAGGGTGCAGAAGAGGGGAAGAGGCAAGGCAACGACACAGTTGGATGTGAAATCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCCGAAGAATTTGGTGATTTTGAGGAGTGGTTCAACTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTAGCTGATAAAACAAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGACCGCACTCTTGCTGATTACATGAAAGATCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACTTCTCTTAAGAAAATTCATGATACTGGCATTGTTCACAGGGATGTAAAGCCAGCTAACTTAGTGGTTACAAAACGGGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATTGGAAAGAATTATGTTCCCAACCGCATCCTTTTGGATCCTGATTATTGCCCCCCAGAATTGTATGTACTCCCAGAAGAAACACCAAGTCCTCCACCAGAGCCAATTGCTGCTTTCCTGTCACCAATCCTGTGGCAGTTAAACAGCCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAAGTTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAATTTGGAAATGAAAAATTGTGGATATGATTTGAAAAAATGGAGGGACTTTACTCGCCTCAGGCCTGACTTCCAAATTCTTGATAGCGAATCTGGTAGAGGGTGGGACTTAGCAACAAAGCTTATCTCTGAGAGAGGTTCCTTAAGAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGACATCCTTATTTTCTTCTTGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAATTAAGCTTAAGCAGAAAGTGA 1521 0.4247 MASLLPPTATATTTIQHNQMTICFSPLKPFTPNNVSFLTNRFKSNPAKCNALFDSVAKGLLENTVSLDQFPSLQSGLVQFQRVTEDLSDIQRWGFLIFGGLIWIYLTARPGVLIGAIDAYLLAPIQLGLDNLSGRRNLKRSDFLVGDKLGEGSFGVVYSGVLASKNVDVEERVQKRGRGKATTQLDVKSKDKVILKKVKVGIQGAEEFGDFEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRILLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSPAALKNFNLEMKNCGYDLKKWRDFTRLRPDFQILDSESGRGWDLATKLISERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi530g00020 506 Gene3D Transferase(Phosphotransferase) domain 1 285 489 - -
Sebi530g00020 506 Gene3D Phosphorylase Kinase; domain 1 131 254 - -
Sebi530g00020 506 SUPERFAMILY Protein kinase-like (PK-like) 140 488 IPR011009 -
Sebi530g00020 506 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 51 506 - -
Sebi530g00020 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Sebi530g00020 506 Pfam Protein kinase domain 294 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi530g00020 506 SMART serkin_6 143 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi530g00020 506 ProSiteProfiles Protein kinase domain profile. 143 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi530g00020 Sebi-Chr530 282184 285962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi530g00020 143 343 MAP Kinase Kinase Kinase AT3G13530 25.000 2.23e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Sebi530g00020 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi530g00020 - - qsa:O6P43_016456 791.571