Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi52g00090 ATGAGCTCGGGATCACAGGATCAGGGTGTGAGTGTTGGCAACTCACTTGTTGCTGGTAATGGGACAACTCGATGGCTCTCCCCTTCAGGTGATTTTGCATTTGGGTTTTACCAACTTCCTAATGAGCTTTTCTTGTTGGCCATATGGTATGATAAGATACCTAATAAGACCATCATTTGGTATGCAAATGGAGACATCCCTACTCCTAAAGGATCAAGGTTGGAACTAAATGACTCTCGTGGGTTAGTGCTCAGTAACCCTCAAGGTTCAGAGCTATGGAGATCAGAATTCACATGGGGTATAGTTTACAGTGGTTTAATGAACAATACTGGAAATTTTCAGTTGCGAGACAAAAGTTTTGAGACATTATGGGACAGTTTCAATCATCCTACTGACACATTGGTTCCTACTCAAGTAATGGAGTTAAATGGCAAACTTTCTTCTCGACAAGGAGAGTTCAACTTCTCACGAGGAAGGTTCAAACTTCATCTCCAAAATGATGGTAATGTTGTGCTCAACCTTATAAATTTTCCTAGCAACTATAGTTATGAGCCTTACTATGGAACAAGCACTGCTGATGCTAATAATCAAACAAATGTTGGCCAACGTTTGATATTTGACCAATCAGGCTTCTTATACATACTAAAAAAAAGTGGGGAGAAGTTTTATATCACCAATCCAAATCAGAATGTCTCAACTGATGGCTTTTATTACAAAGCAACGATTAATTATGATGGAGTTTTCACCATAGCATATTACCCAAAAGATCCAAAAAATGGACAGAGTTGGGTTACTGTAAAGACTATACCCGAAAACATATGTTTGTATTCTACATTCACAGGTGGTGAAGCAAATGGGCATCAAGGTTCACAAGATGATCTGTATACAATGATGGAATTGCCAAACACTGATTGGCCTAAATCTGATTACGAAATATTAAGTCCAAGTAGTCTACAAGAATGCAAAGAATCTTGTTTGCAGGATTGCTTATGTGTGTTGGCTTCTTTCAACCAAAGTTCCTGTTGGAAAAAGAAGCTCCCACTCTCTTATGGGAGGAAAGATCAAGGAGTAAAAGGAATTTCTGTCTTGAAATTGATGAAAAATGATGCTGCTCTCCCAAATGTGAAGAAAGATCATGATACTTTGATCATTGTGATATCAGTTCTTTTAGGTAGCTCTGTTTTCATCATTTTAATGTTGGTTGGTGCAATATGTTTTGGGTTCCCCTACAAATTCAAGAAGATCAAAAGTAGCAGATCAAAGAATAGTTTTGTTGACCAAAATTTGCAACATTTTACCTTCAAGGAAATTGTAGAAGCAACAAGCAATTTTAGAGAAGAATTGGGAAGGGGATCTTGCAGCATTGTCTACAAAGGAACAATTGAGATGATTAGTGTGGCTGTTAAAAAACTAGACAAGTTGATCCAAGACAGTGATAAGGAATTTCAAACTGAAATGAATGTGATAGGTCAAACTAATCACAGGAACCTCATTCGACTTCTTGGGTATTGCAATGAGGGACAACACCGGATTTTGGTATATGAGTTAATGAGAAATGGCACTTTAGCAAGCTTCCTTTTCACTCCTTTGAAACCAGATTGGAATCAACGGAGCCACACTGAAACTGGAATTAGAGGAACCAAAGGTTATGTTGCTCCTGATTGGTTTAGGAGTGCACCAATCACTGCTAAGGTTGATACTTATAGTTTTGGTGTATTATTGTTAGAGATAATTTGTTGTAGGAAAAATGTCGAAAAAGAATTTGTTGGTGAAGAAAAAGGGATTTTGACTGATTGGGCATATGATTGCTACAAGACTAAAAGACTGGACATTCTTCTAGAAAATGATTGTGAGGTTGTCAATGATATGAAGAGCTTGGAAAAGTTTGTCATGATTGTTATTTGGTGCATTCAAGAAGATCCCTTGCGTAGGCCAACAATGAAGGAGGTTTTGTTGATGCTAGAAGGAACTGTTGAAGTTGCGATTCCTCCAAGTCCCTATCTCTATGGTTCTGTTAGTGTAAATTGA 2028 0.3777 MSSGSQDQGVSVGNSLVAGNGTTRWLSPSGDFAFGFYQLPNELFLLAIWYDKIPNKTIIWYANGDIPTPKGSRLELNDSRGLVLSNPQGSELWRSEFTWGIVYSGLMNNTGNFQLRDKSFETLWDSFNHPTDTLVPTQVMELNGKLSSRQGEFNFSRGRFKLHLQNDGNVVLNLINFPSNYSYEPYYGTSTADANNQTNVGQRLIFDQSGFLYILKKSGEKFYITNPNQNVSTDGFYYKATINYDGVFTIAYYPKDPKNGQSWVTVKTIPENICLYSTFTGGEANGHQGSQDDLYTMMELPNTDWPKSDYEILSPSSLQECKESCLQDCLCVLASFNQSSCWKKKLPLSYGRKDQGVKGISVLKLMKNDAALPNVKKDHDTLIIVISVLLGSSVFIILMLVGAICFGFPYKFKKIKSSRSKNSFVDQNLQHFTFKEIVEATSNFREELGRGSCSIVYKGTIEMISVAVKKLDKLIQDSDKEFQTEMNVIGQTNHRNLIRLLGYCNEGQHRILVYELMRNGTLASFLFTPLKPDWNQRSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKEFVGEEKGILTDWAYDCYKTKRLDILLENDCEVVNDMKSLEKFVMIVIWCIQEDPLRRPTMKEVLLMLEGTVEVAIPPSPYLYGSVSVN 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi52g00090 675 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 18 539 - -
Sebi52g00090 675 Gene3D Transferase(Phosphotransferase) domain 1 517 664 - -
Sebi52g00090 675 CDD B_lectin 10 130 IPR001480 -
Sebi52g00090 675 FunFam S-receptor-like serine/threonine-protein kinase 411 516 - -
Sebi52g00090 675 Gene3D - 130 257 IPR036426 -
Sebi52g00090 675 CDD PAN_AP_plant 286 365 - -
Sebi52g00090 675 SUPERFAMILY alpha-D-mannose-specific plant lectins 44 173 IPR036426 -
Sebi52g00090 675 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 5 128 - -
Sebi52g00090 675 SMART blect_4 7 130 IPR001480 -
Sebi52g00090 675 Pfam D-mannose binding lectin 57 145 IPR001480 -
Sebi52g00090 675 Gene3D - 6 129 IPR036426 -
Sebi52g00090 675 Pfam Protein kinase domain 541 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi52g00090 675 Pfam Protein tyrosine and serine/threonine kinase 444 529 IPR001245 GO:0004672|GO:0006468
Sebi52g00090 675 ProSiteProfiles Protein kinase domain profile. 442 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi52g00090 675 FunFam Serine/threonine-protein kinase 131 277 - -
Sebi52g00090 675 ProSiteProfiles Bulb-type lectin domain profile. 1 128 IPR001480 -
Sebi52g00090 675 Gene3D Phosphorylase Kinase; domain 1 408 516 - -
Sebi52g00090 675 SUPERFAMILY Protein kinase-like (PK-like) 419 663 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi52g00090 Sebi-Chr52 2347438 2349853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi52g00090 428 656 Receptor kinase-like Gene Family AT1G60800 30.479 5.41e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi52g00090 Pkinase 5.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi52g00090 - - mtr:25487002 930.243