Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi52g00085 ATGGCTGGAAGTACATCAATGGTATTCACTCGGACATGTGATGCAACTCGGCTTCTGGCCTTGATGCTTAGGAATCTTGGCCTTAAAGCCATCCCAATTAATGGTCATATGAGCCAGCCAAAGAGACTTGGAGCCTTGAATAAGTTCAAGTCTGGAGAGTGCAATATTCTCCTTTGTACTGACGTAGCTAGTAGAGGACTGGATATTCCAACGGTTGATGTGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGTGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAGAAGCTGCCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGGAGGAGCGTGTTAGCGAGGCCAAAAGATTAGCAGTAATGAAAATGAAGGAAACCGGAGGGAAGAAGAAACGGAGGGGCGAAGGAGATGACGGTGAGGAAGATATTGACAAGTACTTAGGTCTTAAGGATGGAAAATCATCCAAGAAGTTTAGAAGAAGATGA 579 0.4456 MAGSTSMVFTRTCDATRLLALMLRNLGLKAIPINGHMSQPKRLGALNKFKSGECNILLCTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAVMKMKETGGKKKRRGEGDDGEEDIDKYLGLKDGKSSKKFRRR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi52g00085 192 Gene3D - 2 179 IPR027417 -
Sebi52g00085 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 133 IPR027417 -
Sebi52g00085 192 Pfam Helicase conserved C-terminal domain 3 98 IPR001650 -
Sebi52g00085 192 CDD SF2_C_DEAD 6 107 - -
Sebi52g00085 192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 137 IPR001650 -
Sebi52g00085 192 SMART helicmild6 17 98 IPR001650 -
Sebi52g00085 192 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 148 - -
Sebi52g00085 192 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi52g00085 Sebi-Chr52 1971114 1972488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi52g00085 4 130 Eukaryotic Initiation Factors Gene Family AT3G19760 35.433 7.78e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi52g00085 K14777 - gmx:100775796 314.694