Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi52g00084 ATGGCACCATGTGCAGCATGCAAGCTTCTTAGAAGGAGATGTGCACAGGATTGTGTGTTTGCACCTTATTTCCCTGCAGATGAACCTCACAAGTTTGGCAGTGTTCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTGCAGGAGTTACCAGAACACCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCCAATGCAAGAGTGAGGGACCCTGTTTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGTGCTTCAAACTCAATTGGCATTGGCACAAGCAGAGGTTGTGCACATGAGAATGAGCCAATTCTCATCCTCCTCAGATCCTCAACCATCATCAATGCCTCCTCCTATGGCCTCTGAGAACTTATACCAATCAAATAGACTCCTTTCTTCTCAGACCAAGTCCCTTTTTGGCACAGACACTGACACCAACATGGGGCAATCCTTGTGGTCATACTAG 486 0.4568 MAPCAACKLLRRRCAQDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMSQFSSSSDPQPSSMPPPMASENLYQSNRLLSSQTKSLFGTDTDTNMGQSLWSY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi52g00084 161 Coils Coil 82 102 - -
Sebi52g00084 161 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Sebi52g00084 161 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Sebi52g00084 161 MobiDBLite consensus disorder prediction 109 129 - -
Sebi52g00084 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi52g00084 Sebi-Chr52 1962512 1966005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi52g00084 2 160 AS2 family AT1G31320 66.049 6.96e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi52g00084 LOB 3.5e-43 No_clan