Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi52g00051 ATGTGTTCTATTTTAGACCCATTGAAACCTTTTGCAATTGATATGGTATTGATGGATGTTGAGGGTGGTAAGATACAAGCCTCAATCCCTAAGCCTATGATGAAGAAGTTCAAGAATACTATCATGGAGGGTCAGGTTTACACCATGATGAATTTTGGTGTCATAAGGAGTGCTGGGAATTACCGTGCCTCAAAACATGAATATAAGTTGTTGTTCAGTGGAAAGACCCGAGTATTCCTAGCTCAGTCTGAATTGATCCCTCTTAATGGACTCTCGCTTGTGAATACAGATGATGTGGCCAAAACTAATGTGGATTCCAACTACCTCATAAACTTGGTAGGACTTCTCACAGCTGTTTCTGGTGAGAAAGAACTCATAACGGAAGGCAGGATGATACAGCTTGAACTGACTGACGAGAAGCAAATGATTTTGTCAATTGTTCCATGGGAAAACTTCAGTGCACTGTATTTGGTGAGATGTGTTGTAATCCAGAACGTTAACAACACTTCTAGAATTCTCTGGAATGCGGATATTGAAGAAGTTAATGACTTCAGGAATTGGCTTGCAATCAATGGAATCGATCCTACTCTTTCTATGGGTGATTTACTAGTTGGTAGTCCAGTTATCCCACTTGCTGATGATTTTCTCAAAATTGTATCCGAGGAAGACTCCAGAGCAGCTACAATTGACAAAGGAGGTCTATACTATTGCTCAAACTGCTGCACACATGTGGTTGAAGTAACTCCAAGGTTTAAGGTGAAGGTGAAGGTGAAGGTGGAGGTATGTCATTGGGATGAAACTGCTGTATTTGTTCTCTTTGACTCTGATGTTGCTCAATTGTTAGGCAAGTCGTGTAAGGAGTTGCTTGTGGAGACAAAGGATATCAAATCGGTTGTCCACCCCCCTGAGTTTATCAATTTGGTTGGGAAAGCACTGTTGTCCAAGGTTGAAAAGGGTCCTGAATATGCATTTAGTTATGATGACTCATTCAAAGTCAAGAAAGTCTATGATGATCCTAAAATAATCACCAAGTTCAAGGACATATGGGGAATAGCAACTCCTAGGAAGACTTATGTGCTTACTATCAAATTCCTTCAGCTGAAGTTCGATCCTCCTTTTCCTACTACGGTTGATGGTGATAATTTGCAATGTGCATGCGAAACCTCATCAGAAGATTTTGAGGTGTTGCTTGATACTCGTGTGACATCAGAATCAACTTTTGAGGCTTCGTCAAGCTCAGGTGCTCAGTTTCAGGTCCCAATCCCTAAGTTTGCACCTGATGAAGAGGAAGATGGGGGAGTCCTGTGTTGA 1311 0.4127 MCSILDPLKPFAIDMVLMDVEGGKIQASIPKPMMKKFKNTIMEGQVYTMMNFGVIRSAGNYRASKHEYKLLFSGKTRVFLAQSELIPLNGLSLVNTDDVAKTNVDSNYLINLVGLLTAVSGEKELITEGRMIQLELTDEKQMILSIVPWENFSALYLVRCVVIQNVNNTSRILWNADIEEVNDFRNWLAINGIDPTLSMGDLLVGSPVIPLADDFLKIVSEEDSRAATIDKGGLYYCSNCCTHVVEVTPRFKVKVKVKVEVCHWDETAVFVLFDSDVAQLLGKSCKELLVETKDIKSVVHPPEFINLVGKALLSKVEKGPEYAFSYDDSFKVKKVYDDPKIITKFKDIWGIATPRKTYVLTIKFLQLKFDPPFPTTVDGDNLQCACETSSEDFEVLLDTRVTSESTFEASSSSGAQFQVPIPKFAPDEEEDGGVLC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi52g00051 436 Gene3D - 86 195 IPR012340 -
Sebi52g00051 436 SUPERFAMILY Nucleic acid-binding proteins 230 300 IPR012340 -
Sebi52g00051 436 SUPERFAMILY Nucleic acid-binding proteins 12 81 IPR012340 -
Sebi52g00051 436 SUPERFAMILY Nucleic acid-binding proteins 92 193 IPR012340 -
Sebi52g00051 436 Gene3D - 9 79 IPR012340 -
Sebi52g00051 436 Pfam Domain of unknown function DUF223 15 109 IPR003871 -
Sebi52g00051 436 Gene3D - 217 336 IPR012340 -
Sebi52g00051 436 CDD RPA1_DBD_A_like 9 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi52g00051 Sebi-Chr52 1168430 1170997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi52g00051 9 194 Core DNA Replication Machinery Family AT2G06510 20.930 8.72e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi52g00051 - - lja:Lj6g3v0884310.1 222.246