Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi52g00020 ATGAGCAACATAAGCATGGTAGAGGCAAAATTGCCACCAGGGTTCAGGTTCCATCCTAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGACACACAGTGATTCCCTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTACACACAGAGAGATAGAAAGTATGCAACAGGGCTGCGAACAAATCGTGCCACTGCCTCAGGCTATTGGAAGGCCACAGGGAAGGACAGACCAATCCTTCGTAAGGGCACCCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGAAGAAAAACTGAGTGGGTCATGCATGAGTTTCGCATTGAGGGTCCCCATGGACCTCCCAAAATTTCTTCTTCCAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAATTTCTTCCAAACCAAGCATGGGTAGCTGCTATGAAGACACAGGATCTTCATCTCTTCCTGCATTAATGGATTCTTACATAAGTTTTGACCAAGCTCAAGTCCATGCAGATGAATTTGAGCAAGTGCCCTGCTTCTCCATTTTTTCTCAAAACCAAAACAACCCCATTTTCAACCACATAACCAATATGGAGCCAAAATTACCTGCCAACAATGCAACTTTATATGGAGGAGCACCCAATTTGGGTTATAGCTTAGACCCTCTGTCCTGTGACAAGAAAGTATTAAAAGCTGTTTTGAGTCAGCTCACAAAGATGGAAAGAAACCCAATTAACCCAAATCTAAAAGGGTCACCAAGTTTAGGGGAAGGAAGTTCAGAGAGTTACTTATCTGAAGTGGGCATGCCCCACTTGTGGAATAATTTCTGA 909 0.4356 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREISSKPSMGSCYEDTGSSSLPALMDSYISFDQAQVHADEFEQVPCFSIFSQNQNNPIFNHITNMEPKLPANNATLYGGAPNLGYSLDPLSCDKKVLKAVLSQLTKMERNPINPNLKGSPSLGEGSSESYLSEVGMPHLWNNF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi52g00020 302 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Sebi52g00020 302 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Sebi52g00020 302 MobiDBLite consensus disorder prediction 269 287 - -
Sebi52g00020 302 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Sebi52g00020 302 MobiDBLite consensus disorder prediction 269 288 - -
Sebi52g00020 302 FunFam NAC domain-containing protein 100-like 20 162 - -
Sebi52g00020 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 210 - -
Sebi52g00020 302 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi52g00020 Sebi-Chr52 455079 459669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi52g00020 2 300 NAC Transcription Factor Family AT1G56010 60.252 2.02e-127 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi52g00020 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi52g00020 - - gmx:100301890 567.385