Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi52g00014 ATGACCTGTTTTCCTTTCTCATTCAGTAAAGGTTCTTCTTCAGCAAGACAAAATCCAGAAATTGATGAAGGTATTCATAATGTTAAAATATACACCTACAAAGAACTAAGAAATGCCACTGATGATTTTAGTCCGGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAAGTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTAAATGAGTTCCTGACAGAGATTAATGTGATCTCTGAAATAGAGCATGAAAATTTGGTGAAGTTATATGGTTGTTGTGTGGAAAGAAATAACAGAATATTAGTCTACAACTACCTTGAAAATAACAGCCTTGCACAAACTCTTCTAGGTGGAGGTCACAGTGGTATCTACTTTGATTGGAGAACACGATCTAGAATATGCATTGGGATTGCACGTGGGCTTGCCTTTCTTCATGAAGAAGTAAGGCCTCTTATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAGACCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGCTACTTGGCACCAGAGTATGCAATAGGAGGGAGGCTAACACGAAAAGCAGATATTTACAGTTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGGAGATGTAACACAAATTCACGATTACCAATAGAAGAACAGTTTCTTCTTGAGAGGGCATGGGAATTTTATGAACAAAAGGAATTAGTAGGGCTGGTAGATACATCACTAAATGGAGAATTTGATACTGAGCAGGCTTGTAATTTTCTGAAGATTGGCCTTCTTTGCACTCAGGAATCTCCAAAGCAACGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAAAAATTAATGTTGATGAAAGTACCATAACAAAACCAGCCTTAATTTCTGATTTTATGGATCTCAAAGTTAGAAAGAAAGAGGAATATGATATTGGTACAAAGACTTTATCTACATTCAATACATCCTCTTCCTCAGACTACCAGGACACTACCATGTCATCAGCTACAACTACAACCTTCACTGCAAAATATGATCAAAGCATATAA 1155 0.3844 MTCFPFSFSKGSSSARQNPEIDEGIHNVKIYTYKELRNATDDFSPANKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVNEFLTEINVISEIEHENLVKLYGCCVERNNRILVYNYLENNSLAQTLLGGGHSGIYFDWRTRSRICIGIARGLAFLHEEVRPLIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFLLERAWEFYEQKELVGLVDTSLNGEFDTEQACNFLKIGLLCTQESPKQRPSMSSVVKMLTGKINVDESTITKPALISDFMDLKVRKKEEYDIGTKTLSTFNTSSSSDYQDTTMSSATTTTFTAKYDQSI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi52g00014 384 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi52g00014 384 CDD STKc_IRAK 49 316 - -
Sebi52g00014 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Sebi52g00014 384 SUPERFAMILY Protein kinase-like (PK-like) 20 314 IPR011009 -
Sebi52g00014 384 FunFam cold-responsive protein kinase 1 14 118 - -
Sebi52g00014 384 FunFam cold-responsive protein kinase 1 119 330 - -
Sebi52g00014 384 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi52g00014 384 Gene3D Phosphorylase Kinase; domain 1 13 118 - -
Sebi52g00014 384 Gene3D Transferase(Phosphotransferase) domain 1 119 328 - -
Sebi52g00014 384 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 356 - -
Sebi52g00014 384 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Sebi52g00014 384 Pfam Protein kinase domain 46 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi52g00014 Sebi-Chr52 252076 255298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi52g00014 31 368 Receptor kinase-like Gene Family AT1G53430 52.507 2.02e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi52g00014 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi52g00014 - - gmx:100782320 638.262