Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi529g00006 ATGTCTCCACCACTGCTGGTTACTGAAGAGGAAGGGCAGAGCAAAGCCTCAACAATAGCATCTGCATCTTCACAATCCCTGGATTGCTTCTCCCAAACTGGGGCTGGACTGAAAGAGCGCAATTACCTGGGATTGTCGGATTGCTCATCGGTGGACAGTTCTACTGTCCCAAACTTGTCTGATGAGAAAAAGGAAAACCTAAATTTGAAGGCTACAGAGTTGAGGCTGGGCCTTCCTGGGTCCCAGTCACCTGAAAGGGATCCAGATCTTTTCTCATTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATTGTCCCAGAAAACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCCGATGCAATGGATGGGTTCCCTGAGGGGAAATTTCCTGGTAATGCAGGGATAAAGATAATGCTATCACCTAGACCTTCAGGAGCTCCTTCAACCACAATTAAAGAAATACCAAGCAAGGTGTTACAAGAACGTCCTTGTGCAGCAAATGGAACTGGTCATAACCATACAGGGGCTTCTATCAGTGGCAGTGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCATGGAGCTCCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACTTCCTGCATGGTTCAGAATATGTGCTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCTATGGAGAAATCCAAGAGCAGGAGCTAG 1062 0.4576 MSPPLLVTEEEGQSKASTIASASSQSLDCFSQTGAGLKERNYLGLSDCSSVDSSTVPNLSDEKKENLNLKATELRLGLPGSQSPERDPDLFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADAMDGFPEGKFPGNAGIKIMLSPRPSGAPSTTIKEIPSKVLQERPCAANGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi529g00006 353 ProSiteProfiles PB1 domain profile. 233 337 IPR000270 GO:0005515
Sebi529g00006 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 340 IPR003311 GO:0005634|GO:0006355
Sebi529g00006 353 Gene3D - 230 347 - -
Sebi529g00006 353 SUPERFAMILY CAD & PB1 domains 231 334 - -
Sebi529g00006 353 FunFam Auxin-responsive protein 228 345 - -
Sebi529g00006 353 Pfam AUX/IAA family 72 344 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi529g00006 Sebi-Chr529 387860 391615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi529g00006 247 333 B3 DNA Binding Superfamily AT1G19220 32.184 2.31e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sebi529g00006 AUX_IAA 3e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi529g00006 K14484 - gmx:100500373 622.854